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Parameter Identifiability of Fundamental Pharmacodynamic Models
Issues of parameter identifiability of routinely used pharmacodynamics models are considered in this paper. The structural identifiability of 16 commonly applied pharmacodynamic model structures was analyzed analytically, using the input-output approach. Both fixed-effects versions (non-population,...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5136565/ https://www.ncbi.nlm.nih.gov/pubmed/27994553 http://dx.doi.org/10.3389/fphys.2016.00590 |
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author | Janzén, David L. I. Bergenholm, Linnéa Jirstrand, Mats Parkinson, Joanna Yates, James Evans, Neil D. Chappell, Michael J. |
author_facet | Janzén, David L. I. Bergenholm, Linnéa Jirstrand, Mats Parkinson, Joanna Yates, James Evans, Neil D. Chappell, Michael J. |
author_sort | Janzén, David L. I. |
collection | PubMed |
description | Issues of parameter identifiability of routinely used pharmacodynamics models are considered in this paper. The structural identifiability of 16 commonly applied pharmacodynamic model structures was analyzed analytically, using the input-output approach. Both fixed-effects versions (non-population, no between-subject variability) and mixed-effects versions (population, including between-subject variability) of each model structure were analyzed. All models were found to be structurally globally identifiable under conditions of fixing either one of two particular parameters. Furthermore, an example was constructed to illustrate the importance of sufficient data quality and show that structural identifiability is a prerequisite, but not a guarantee, for successful parameter estimation and practical parameter identifiability. This analysis was performed by generating artificial data of varying quality to a structurally identifiable model with known true parameter values, followed by re-estimation of the parameter values. In addition, to show the benefit of including structural identifiability as part of model development, a case study was performed applying an unidentifiable model to real experimental data. This case study shows how performing such an analysis prior to parameter estimation can improve the parameter estimation process and model performance. Finally, an unidentifiable model was fitted to simulated data using multiple initial parameter values, resulting in highly different estimated uncertainties. This example shows that although the standard errors of the parameter estimates often indicate a structural identifiability issue, reasonably “good” standard errors may sometimes mask unidentifiability issues. |
format | Online Article Text |
id | pubmed-5136565 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-51365652016-12-19 Parameter Identifiability of Fundamental Pharmacodynamic Models Janzén, David L. I. Bergenholm, Linnéa Jirstrand, Mats Parkinson, Joanna Yates, James Evans, Neil D. Chappell, Michael J. Front Physiol Physiology Issues of parameter identifiability of routinely used pharmacodynamics models are considered in this paper. The structural identifiability of 16 commonly applied pharmacodynamic model structures was analyzed analytically, using the input-output approach. Both fixed-effects versions (non-population, no between-subject variability) and mixed-effects versions (population, including between-subject variability) of each model structure were analyzed. All models were found to be structurally globally identifiable under conditions of fixing either one of two particular parameters. Furthermore, an example was constructed to illustrate the importance of sufficient data quality and show that structural identifiability is a prerequisite, but not a guarantee, for successful parameter estimation and practical parameter identifiability. This analysis was performed by generating artificial data of varying quality to a structurally identifiable model with known true parameter values, followed by re-estimation of the parameter values. In addition, to show the benefit of including structural identifiability as part of model development, a case study was performed applying an unidentifiable model to real experimental data. This case study shows how performing such an analysis prior to parameter estimation can improve the parameter estimation process and model performance. Finally, an unidentifiable model was fitted to simulated data using multiple initial parameter values, resulting in highly different estimated uncertainties. This example shows that although the standard errors of the parameter estimates often indicate a structural identifiability issue, reasonably “good” standard errors may sometimes mask unidentifiability issues. Frontiers Media S.A. 2016-12-05 /pmc/articles/PMC5136565/ /pubmed/27994553 http://dx.doi.org/10.3389/fphys.2016.00590 Text en Copyright © 2016 Janzén, Bergenholm, Jirstrand, Parkinson, Yates, Evans and Chappell. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Physiology Janzén, David L. I. Bergenholm, Linnéa Jirstrand, Mats Parkinson, Joanna Yates, James Evans, Neil D. Chappell, Michael J. Parameter Identifiability of Fundamental Pharmacodynamic Models |
title | Parameter Identifiability of Fundamental Pharmacodynamic Models |
title_full | Parameter Identifiability of Fundamental Pharmacodynamic Models |
title_fullStr | Parameter Identifiability of Fundamental Pharmacodynamic Models |
title_full_unstemmed | Parameter Identifiability of Fundamental Pharmacodynamic Models |
title_short | Parameter Identifiability of Fundamental Pharmacodynamic Models |
title_sort | parameter identifiability of fundamental pharmacodynamic models |
topic | Physiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5136565/ https://www.ncbi.nlm.nih.gov/pubmed/27994553 http://dx.doi.org/10.3389/fphys.2016.00590 |
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