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Micro-CT(vlab): A web based virtual gallery of biological specimens using X-ray microtomography (micro-CT)
Abstract. BACKGROUND: During recent years, X-ray microtomography (micro-CT) has seen an increasing use in biological research areas, such as functional morphology, taxonomy, evolutionary biology and developmental research. Micro-CT is a technology which uses X-rays to create sub-micron resolution im...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Pensoft Publishers
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5139143/ https://www.ncbi.nlm.nih.gov/pubmed/27956848 http://dx.doi.org/10.3897/BDJ.4.e8740 |
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author | Keklikoglou, Kleoniki Faulwetter, Sarah Chatzinikolaou, Eva Michalakis, Nikitas Filiopoulou, Irene Minadakis, Nikos Panteri, Emmanouela Perantinos, George Gougousis, Alexandros Arvanitidis, Christos |
author_facet | Keklikoglou, Kleoniki Faulwetter, Sarah Chatzinikolaou, Eva Michalakis, Nikitas Filiopoulou, Irene Minadakis, Nikos Panteri, Emmanouela Perantinos, George Gougousis, Alexandros Arvanitidis, Christos |
author_sort | Keklikoglou, Kleoniki |
collection | PubMed |
description | Abstract. BACKGROUND: During recent years, X-ray microtomography (micro-CT) has seen an increasing use in biological research areas, such as functional morphology, taxonomy, evolutionary biology and developmental research. Micro-CT is a technology which uses X-rays to create sub-micron resolution images of external and internal features of specimens. These images can then be rendered in a three-dimensional space and used for qualitative and quantitative 3D analyses. However, the online exploration and dissemination of micro-CT datasets are rarely made available to the public due to their large size and a lack of dedicated online platforms for the interactive manipulation of 3D data. Here, the development of a virtual micro-CT laboratory (Micro-CT(vlab)) is described, which can be used by everyone who is interested in digitisation methods and biological collections and aims at making the micro-CT data exploration of natural history specimens freely available over the internet. NEW INFORMATION: The Micro-CT(vlab) offers to the user virtual image galleries of various taxa which can be displayed and downloaded through a web application. With a few clicks, accurate, detailed and three-dimensional models of species can be studied and virtually dissected without destroying the actual specimen. The data and functions of the Micro-CT(vlab) can be accessed either on a normal computer or through a dedicated version for mobile devices. |
format | Online Article Text |
id | pubmed-5139143 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Pensoft Publishers |
record_format | MEDLINE/PubMed |
spelling | pubmed-51391432016-12-12 Micro-CT(vlab): A web based virtual gallery of biological specimens using X-ray microtomography (micro-CT) Keklikoglou, Kleoniki Faulwetter, Sarah Chatzinikolaou, Eva Michalakis, Nikitas Filiopoulou, Irene Minadakis, Nikos Panteri, Emmanouela Perantinos, George Gougousis, Alexandros Arvanitidis, Christos Biodivers Data J Software Description Abstract. BACKGROUND: During recent years, X-ray microtomography (micro-CT) has seen an increasing use in biological research areas, such as functional morphology, taxonomy, evolutionary biology and developmental research. Micro-CT is a technology which uses X-rays to create sub-micron resolution images of external and internal features of specimens. These images can then be rendered in a three-dimensional space and used for qualitative and quantitative 3D analyses. However, the online exploration and dissemination of micro-CT datasets are rarely made available to the public due to their large size and a lack of dedicated online platforms for the interactive manipulation of 3D data. Here, the development of a virtual micro-CT laboratory (Micro-CT(vlab)) is described, which can be used by everyone who is interested in digitisation methods and biological collections and aims at making the micro-CT data exploration of natural history specimens freely available over the internet. NEW INFORMATION: The Micro-CT(vlab) offers to the user virtual image galleries of various taxa which can be displayed and downloaded through a web application. With a few clicks, accurate, detailed and three-dimensional models of species can be studied and virtually dissected without destroying the actual specimen. The data and functions of the Micro-CT(vlab) can be accessed either on a normal computer or through a dedicated version for mobile devices. Pensoft Publishers 2016-11-01 /pmc/articles/PMC5139143/ /pubmed/27956848 http://dx.doi.org/10.3897/BDJ.4.e8740 Text en Kleoniki Keklikoglou, Sarah Faulwetter, Eva Chatzinikolaou, Nikitas Michalakis, Irene Filiopoulou, Nikos Minadakis, Emmanouela Panteri, George Perantinos, Alexandros Gougousis, Christos Arvanitidis http://creativecommons.org/licenses/by/4.0 This is an open access article distributed under the terms of the Creative Commons Attribution License 4.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Software Description Keklikoglou, Kleoniki Faulwetter, Sarah Chatzinikolaou, Eva Michalakis, Nikitas Filiopoulou, Irene Minadakis, Nikos Panteri, Emmanouela Perantinos, George Gougousis, Alexandros Arvanitidis, Christos Micro-CT(vlab): A web based virtual gallery of biological specimens using X-ray microtomography (micro-CT) |
title | Micro-CT(vlab): A web based virtual gallery of biological specimens using X-ray microtomography (micro-CT) |
title_full | Micro-CT(vlab): A web based virtual gallery of biological specimens using X-ray microtomography (micro-CT) |
title_fullStr | Micro-CT(vlab): A web based virtual gallery of biological specimens using X-ray microtomography (micro-CT) |
title_full_unstemmed | Micro-CT(vlab): A web based virtual gallery of biological specimens using X-ray microtomography (micro-CT) |
title_short | Micro-CT(vlab): A web based virtual gallery of biological specimens using X-ray microtomography (micro-CT) |
title_sort | micro-ct(vlab): a web based virtual gallery of biological specimens using x-ray microtomography (micro-ct) |
topic | Software Description |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5139143/ https://www.ncbi.nlm.nih.gov/pubmed/27956848 http://dx.doi.org/10.3897/BDJ.4.e8740 |
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