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A chromosome-level genome assembly of the Asian arowana, Scleropages formosus

Asian arowana (Scleropages formosus), an ancient teleost belonging to the Order Osteoglossomorpha, has been a valuable ornamental fish with some varieties. However, its biological studies and breeding germplasm have been remarkably limited by the lack of a reference genome. To solve these problems,...

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Autores principales: Li, Jia, Bian, Chao, Hu, Yinchang, Mu, Xidong, Shen, Xueyan, Ravi, Vydianathan, Kuznetsova, Inna S., Sun, Ying, You, Xinxin, Qiu, Ying, Zhang, Xinhui, Yu, Hui, Huang, Yu, Xu, Pao, Gu, Ruobo, Xu, Junmin, Orbán, László, Venkatesh, Byrappa, Shi, Qiong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5139669/
https://www.ncbi.nlm.nih.gov/pubmed/27922628
http://dx.doi.org/10.1038/sdata.2016.105
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author Li, Jia
Bian, Chao
Hu, Yinchang
Mu, Xidong
Shen, Xueyan
Ravi, Vydianathan
Kuznetsova, Inna S.
Sun, Ying
You, Xinxin
Qiu, Ying
Zhang, Xinhui
Yu, Hui
Huang, Yu
Xu, Pao
Gu, Ruobo
Xu, Junmin
Orbán, László
Venkatesh, Byrappa
Shi, Qiong
author_facet Li, Jia
Bian, Chao
Hu, Yinchang
Mu, Xidong
Shen, Xueyan
Ravi, Vydianathan
Kuznetsova, Inna S.
Sun, Ying
You, Xinxin
Qiu, Ying
Zhang, Xinhui
Yu, Hui
Huang, Yu
Xu, Pao
Gu, Ruobo
Xu, Junmin
Orbán, László
Venkatesh, Byrappa
Shi, Qiong
author_sort Li, Jia
collection PubMed
description Asian arowana (Scleropages formosus), an ancient teleost belonging to the Order Osteoglossomorpha, has been a valuable ornamental fish with some varieties. However, its biological studies and breeding germplasm have been remarkably limited by the lack of a reference genome. To solve these problems, here we report high-quality genome sequences of three common varieties of Asian arowana (the golden, red and green arowana). We firstly generated a chromosome-level genome assembly of the golden arowana, on basis of the genetic linkage map constructed with the restriction site-associated DNA sequencing (RAD-seq). In addition, we obtained draft genome assemblies of the red and green varieties. Finally, we annotated 22,016, 21,256 and 21,524 protein-coding genes in the genome assemblies of golden, red and green varieties respectively. Our data were deposited in publicly accessible repositories to promote biological research and molecular breeding of Asian arowana.
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spelling pubmed-51396692016-12-08 A chromosome-level genome assembly of the Asian arowana, Scleropages formosus Li, Jia Bian, Chao Hu, Yinchang Mu, Xidong Shen, Xueyan Ravi, Vydianathan Kuznetsova, Inna S. Sun, Ying You, Xinxin Qiu, Ying Zhang, Xinhui Yu, Hui Huang, Yu Xu, Pao Gu, Ruobo Xu, Junmin Orbán, László Venkatesh, Byrappa Shi, Qiong Sci Data Data Descriptor Asian arowana (Scleropages formosus), an ancient teleost belonging to the Order Osteoglossomorpha, has been a valuable ornamental fish with some varieties. However, its biological studies and breeding germplasm have been remarkably limited by the lack of a reference genome. To solve these problems, here we report high-quality genome sequences of three common varieties of Asian arowana (the golden, red and green arowana). We firstly generated a chromosome-level genome assembly of the golden arowana, on basis of the genetic linkage map constructed with the restriction site-associated DNA sequencing (RAD-seq). In addition, we obtained draft genome assemblies of the red and green varieties. Finally, we annotated 22,016, 21,256 and 21,524 protein-coding genes in the genome assemblies of golden, red and green varieties respectively. Our data were deposited in publicly accessible repositories to promote biological research and molecular breeding of Asian arowana. Nature Publishing Group 2016-12-06 /pmc/articles/PMC5139669/ /pubmed/27922628 http://dx.doi.org/10.1038/sdata.2016.105 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0 Metadata associated with this Data Descriptor is available at http://www.nature.com/sdata/ and is released under the CC0 waiver to maximize reuse.
spellingShingle Data Descriptor
Li, Jia
Bian, Chao
Hu, Yinchang
Mu, Xidong
Shen, Xueyan
Ravi, Vydianathan
Kuznetsova, Inna S.
Sun, Ying
You, Xinxin
Qiu, Ying
Zhang, Xinhui
Yu, Hui
Huang, Yu
Xu, Pao
Gu, Ruobo
Xu, Junmin
Orbán, László
Venkatesh, Byrappa
Shi, Qiong
A chromosome-level genome assembly of the Asian arowana, Scleropages formosus
title A chromosome-level genome assembly of the Asian arowana, Scleropages formosus
title_full A chromosome-level genome assembly of the Asian arowana, Scleropages formosus
title_fullStr A chromosome-level genome assembly of the Asian arowana, Scleropages formosus
title_full_unstemmed A chromosome-level genome assembly of the Asian arowana, Scleropages formosus
title_short A chromosome-level genome assembly of the Asian arowana, Scleropages formosus
title_sort chromosome-level genome assembly of the asian arowana, scleropages formosus
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5139669/
https://www.ncbi.nlm.nih.gov/pubmed/27922628
http://dx.doi.org/10.1038/sdata.2016.105
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