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A chromosome-level genome assembly of the Asian arowana, Scleropages formosus
Asian arowana (Scleropages formosus), an ancient teleost belonging to the Order Osteoglossomorpha, has been a valuable ornamental fish with some varieties. However, its biological studies and breeding germplasm have been remarkably limited by the lack of a reference genome. To solve these problems,...
Autores principales: | , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5139669/ https://www.ncbi.nlm.nih.gov/pubmed/27922628 http://dx.doi.org/10.1038/sdata.2016.105 |
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author | Li, Jia Bian, Chao Hu, Yinchang Mu, Xidong Shen, Xueyan Ravi, Vydianathan Kuznetsova, Inna S. Sun, Ying You, Xinxin Qiu, Ying Zhang, Xinhui Yu, Hui Huang, Yu Xu, Pao Gu, Ruobo Xu, Junmin Orbán, László Venkatesh, Byrappa Shi, Qiong |
author_facet | Li, Jia Bian, Chao Hu, Yinchang Mu, Xidong Shen, Xueyan Ravi, Vydianathan Kuznetsova, Inna S. Sun, Ying You, Xinxin Qiu, Ying Zhang, Xinhui Yu, Hui Huang, Yu Xu, Pao Gu, Ruobo Xu, Junmin Orbán, László Venkatesh, Byrappa Shi, Qiong |
author_sort | Li, Jia |
collection | PubMed |
description | Asian arowana (Scleropages formosus), an ancient teleost belonging to the Order Osteoglossomorpha, has been a valuable ornamental fish with some varieties. However, its biological studies and breeding germplasm have been remarkably limited by the lack of a reference genome. To solve these problems, here we report high-quality genome sequences of three common varieties of Asian arowana (the golden, red and green arowana). We firstly generated a chromosome-level genome assembly of the golden arowana, on basis of the genetic linkage map constructed with the restriction site-associated DNA sequencing (RAD-seq). In addition, we obtained draft genome assemblies of the red and green varieties. Finally, we annotated 22,016, 21,256 and 21,524 protein-coding genes in the genome assemblies of golden, red and green varieties respectively. Our data were deposited in publicly accessible repositories to promote biological research and molecular breeding of Asian arowana. |
format | Online Article Text |
id | pubmed-5139669 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-51396692016-12-08 A chromosome-level genome assembly of the Asian arowana, Scleropages formosus Li, Jia Bian, Chao Hu, Yinchang Mu, Xidong Shen, Xueyan Ravi, Vydianathan Kuznetsova, Inna S. Sun, Ying You, Xinxin Qiu, Ying Zhang, Xinhui Yu, Hui Huang, Yu Xu, Pao Gu, Ruobo Xu, Junmin Orbán, László Venkatesh, Byrappa Shi, Qiong Sci Data Data Descriptor Asian arowana (Scleropages formosus), an ancient teleost belonging to the Order Osteoglossomorpha, has been a valuable ornamental fish with some varieties. However, its biological studies and breeding germplasm have been remarkably limited by the lack of a reference genome. To solve these problems, here we report high-quality genome sequences of three common varieties of Asian arowana (the golden, red and green arowana). We firstly generated a chromosome-level genome assembly of the golden arowana, on basis of the genetic linkage map constructed with the restriction site-associated DNA sequencing (RAD-seq). In addition, we obtained draft genome assemblies of the red and green varieties. Finally, we annotated 22,016, 21,256 and 21,524 protein-coding genes in the genome assemblies of golden, red and green varieties respectively. Our data were deposited in publicly accessible repositories to promote biological research and molecular breeding of Asian arowana. Nature Publishing Group 2016-12-06 /pmc/articles/PMC5139669/ /pubmed/27922628 http://dx.doi.org/10.1038/sdata.2016.105 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0 Metadata associated with this Data Descriptor is available at http://www.nature.com/sdata/ and is released under the CC0 waiver to maximize reuse. |
spellingShingle | Data Descriptor Li, Jia Bian, Chao Hu, Yinchang Mu, Xidong Shen, Xueyan Ravi, Vydianathan Kuznetsova, Inna S. Sun, Ying You, Xinxin Qiu, Ying Zhang, Xinhui Yu, Hui Huang, Yu Xu, Pao Gu, Ruobo Xu, Junmin Orbán, László Venkatesh, Byrappa Shi, Qiong A chromosome-level genome assembly of the Asian arowana, Scleropages formosus |
title | A chromosome-level genome assembly of the Asian arowana, Scleropages formosus |
title_full | A chromosome-level genome assembly of the Asian arowana, Scleropages formosus |
title_fullStr | A chromosome-level genome assembly of the Asian arowana, Scleropages formosus |
title_full_unstemmed | A chromosome-level genome assembly of the Asian arowana, Scleropages formosus |
title_short | A chromosome-level genome assembly of the Asian arowana, Scleropages formosus |
title_sort | chromosome-level genome assembly of the asian arowana, scleropages formosus |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5139669/ https://www.ncbi.nlm.nih.gov/pubmed/27922628 http://dx.doi.org/10.1038/sdata.2016.105 |
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