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Polymer translocation through nano-pores in vibrating thin membranes

Polymer translocation is a promising strategy for the next-generation DNA sequencing technologies. The use of biological and synthetic nano-pores, however, still suffers from serious drawbacks. In particular, the width of the membrane layer can accommodate several bases at the same time, making diff...

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Detalles Bibliográficos
Autores principales: Menais, Timothée, Mossa, Stefano, Buhot, Arnaud
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5146916/
https://www.ncbi.nlm.nih.gov/pubmed/27934936
http://dx.doi.org/10.1038/srep38558
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author Menais, Timothée
Mossa, Stefano
Buhot, Arnaud
author_facet Menais, Timothée
Mossa, Stefano
Buhot, Arnaud
author_sort Menais, Timothée
collection PubMed
description Polymer translocation is a promising strategy for the next-generation DNA sequencing technologies. The use of biological and synthetic nano-pores, however, still suffers from serious drawbacks. In particular, the width of the membrane layer can accommodate several bases at the same time, making difficult accurate sequencing applications. More recently, the use of graphene membranes has paved the way to new sequencing capabilities, with the possibility to measure transverse currents, among other advances. The reduced thickness of these new membranes poses new questions on the effect of deformability and vibrations of the membrane on the translocation process, two features which are not taken into account in the well established theoretical frameworks. Here, we make a first step forward in this direction. We report numerical simulation work on a model system simple enough to allow gathering significant insight on the effect of these features on the average translocation time, with appropriate statistical significance. We have found that the interplay between thermal fluctuations and the deformability properties of the nano-pore play a crucial role in determining the process. We conclude by discussing new directions for further work.
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spelling pubmed-51469162016-12-16 Polymer translocation through nano-pores in vibrating thin membranes Menais, Timothée Mossa, Stefano Buhot, Arnaud Sci Rep Article Polymer translocation is a promising strategy for the next-generation DNA sequencing technologies. The use of biological and synthetic nano-pores, however, still suffers from serious drawbacks. In particular, the width of the membrane layer can accommodate several bases at the same time, making difficult accurate sequencing applications. More recently, the use of graphene membranes has paved the way to new sequencing capabilities, with the possibility to measure transverse currents, among other advances. The reduced thickness of these new membranes poses new questions on the effect of deformability and vibrations of the membrane on the translocation process, two features which are not taken into account in the well established theoretical frameworks. Here, we make a first step forward in this direction. We report numerical simulation work on a model system simple enough to allow gathering significant insight on the effect of these features on the average translocation time, with appropriate statistical significance. We have found that the interplay between thermal fluctuations and the deformability properties of the nano-pore play a crucial role in determining the process. We conclude by discussing new directions for further work. Nature Publishing Group 2016-12-09 /pmc/articles/PMC5146916/ /pubmed/27934936 http://dx.doi.org/10.1038/srep38558 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Menais, Timothée
Mossa, Stefano
Buhot, Arnaud
Polymer translocation through nano-pores in vibrating thin membranes
title Polymer translocation through nano-pores in vibrating thin membranes
title_full Polymer translocation through nano-pores in vibrating thin membranes
title_fullStr Polymer translocation through nano-pores in vibrating thin membranes
title_full_unstemmed Polymer translocation through nano-pores in vibrating thin membranes
title_short Polymer translocation through nano-pores in vibrating thin membranes
title_sort polymer translocation through nano-pores in vibrating thin membranes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5146916/
https://www.ncbi.nlm.nih.gov/pubmed/27934936
http://dx.doi.org/10.1038/srep38558
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