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Systematic analysis of the lysine acetylome in Fusarium graminearum

BACKGROUND: Lysine acetylation in proteins is a ubiquitous and conserved post-translational modification, playing a critical regulatory role in almost every aspect of living cells. Although known for many years, its function remains elusive in Fusarium graminearum, one of the most important necrotro...

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Autores principales: Zhou, Shanyue, Yang, Qianqian, Yin, Changfa, Liu, Lin, Liang, Wenxing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5153868/
https://www.ncbi.nlm.nih.gov/pubmed/27964708
http://dx.doi.org/10.1186/s12864-016-3361-3
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author Zhou, Shanyue
Yang, Qianqian
Yin, Changfa
Liu, Lin
Liang, Wenxing
author_facet Zhou, Shanyue
Yang, Qianqian
Yin, Changfa
Liu, Lin
Liang, Wenxing
author_sort Zhou, Shanyue
collection PubMed
description BACKGROUND: Lysine acetylation in proteins is a ubiquitous and conserved post-translational modification, playing a critical regulatory role in almost every aspect of living cells. Although known for many years, its function remains elusive in Fusarium graminearum, one of the most important necrotrophic plant pathogens with huge economic impact. RESULTS: By the combination of affinity enrichment and high-resolution LC-MS/MS analysis, large-scale lysine acetylome analysis was performed. In total, 577 lysine acetylation sites matched to 364 different proteins were identified. Bioinformatics analysis of the acetylome showed that the acetylated proteins are involved in a wide range of cellular functions and exhibit diverse subcellular localizations. Remarkably, 10 proteins involved in the virulence or DON (deoxynivalenol) biosynthesis were found to be acetylated, including 4 transcription factors, 4 protein kinases and 2 phosphatases. Protein-protein interaction network analysis revealed that acetylated protein complexes are involved in diversified interactions. CONCLUSIONS: This work provides the first comprehensive survey of a possible lysine acetylome in F. graminearum and reveals previously unappreciated roles of lysine acetylation in the regulation of diverse biological processes. This work provides a resource for functional analysis of acetylated proteins in filamentous fungi. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12864-016-3361-3) contains supplementary material, which is available to authorized users.
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spelling pubmed-51538682016-12-20 Systematic analysis of the lysine acetylome in Fusarium graminearum Zhou, Shanyue Yang, Qianqian Yin, Changfa Liu, Lin Liang, Wenxing BMC Genomics Research Article BACKGROUND: Lysine acetylation in proteins is a ubiquitous and conserved post-translational modification, playing a critical regulatory role in almost every aspect of living cells. Although known for many years, its function remains elusive in Fusarium graminearum, one of the most important necrotrophic plant pathogens with huge economic impact. RESULTS: By the combination of affinity enrichment and high-resolution LC-MS/MS analysis, large-scale lysine acetylome analysis was performed. In total, 577 lysine acetylation sites matched to 364 different proteins were identified. Bioinformatics analysis of the acetylome showed that the acetylated proteins are involved in a wide range of cellular functions and exhibit diverse subcellular localizations. Remarkably, 10 proteins involved in the virulence or DON (deoxynivalenol) biosynthesis were found to be acetylated, including 4 transcription factors, 4 protein kinases and 2 phosphatases. Protein-protein interaction network analysis revealed that acetylated protein complexes are involved in diversified interactions. CONCLUSIONS: This work provides the first comprehensive survey of a possible lysine acetylome in F. graminearum and reveals previously unappreciated roles of lysine acetylation in the regulation of diverse biological processes. This work provides a resource for functional analysis of acetylated proteins in filamentous fungi. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12864-016-3361-3) contains supplementary material, which is available to authorized users. BioMed Central 2016-12-13 /pmc/articles/PMC5153868/ /pubmed/27964708 http://dx.doi.org/10.1186/s12864-016-3361-3 Text en © The Author(s). 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Zhou, Shanyue
Yang, Qianqian
Yin, Changfa
Liu, Lin
Liang, Wenxing
Systematic analysis of the lysine acetylome in Fusarium graminearum
title Systematic analysis of the lysine acetylome in Fusarium graminearum
title_full Systematic analysis of the lysine acetylome in Fusarium graminearum
title_fullStr Systematic analysis of the lysine acetylome in Fusarium graminearum
title_full_unstemmed Systematic analysis of the lysine acetylome in Fusarium graminearum
title_short Systematic analysis of the lysine acetylome in Fusarium graminearum
title_sort systematic analysis of the lysine acetylome in fusarium graminearum
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5153868/
https://www.ncbi.nlm.nih.gov/pubmed/27964708
http://dx.doi.org/10.1186/s12864-016-3361-3
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