Cargando…
Novel Biomarker MicroRNAs for Subtyping of Acute Coronary Syndrome: A Bioinformatics Approach
Acute coronary syndrome (ACS) is a life-threatening disease that affects more than half a million people in United States. We currently lack molecular biomarkers to distinguish the unstable angina (UA) and acute myocardial infarction (AMI), which are the two subtypes of ACS. MicroRNAs play significa...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi Publishing Corporation
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5156791/ https://www.ncbi.nlm.nih.gov/pubmed/28044128 http://dx.doi.org/10.1155/2016/4618323 |
_version_ | 1782481324523651072 |
---|---|
author | Zhu, Yujie Lin, Yuxin Yan, Wenying Sun, Zhandong Jiang, Zhi Shen, Bairong Jiang, Xiaoqian Shi, Jingjing |
author_facet | Zhu, Yujie Lin, Yuxin Yan, Wenying Sun, Zhandong Jiang, Zhi Shen, Bairong Jiang, Xiaoqian Shi, Jingjing |
author_sort | Zhu, Yujie |
collection | PubMed |
description | Acute coronary syndrome (ACS) is a life-threatening disease that affects more than half a million people in United States. We currently lack molecular biomarkers to distinguish the unstable angina (UA) and acute myocardial infarction (AMI), which are the two subtypes of ACS. MicroRNAs play significant roles in biological processes and serve as good candidates for biomarkers. In this work, we collected microRNA datasets from the Gene Expression Omnibus database and identified specific microRNAs in different subtypes and universal microRNAs in all subtypes based on our novel network-based bioinformatics approach. These microRNAs were studied for ACS association by pathway enrichment analysis of their target genes. AMI and UA were associated with 27 and 26 microRNAs, respectively, nine of them were detected for both AMI and UA, and five from each subtype had been reported previously. The remaining 22 and 21 microRNAs are novel microRNA biomarkers for AMI and UA, respectively. The findings are then supported by pathway enrichment analysis of the targets of these microRNAs. These novel microRNAs deserve further validation and will be helpful for personalized ACS diagnosis. |
format | Online Article Text |
id | pubmed-5156791 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Hindawi Publishing Corporation |
record_format | MEDLINE/PubMed |
spelling | pubmed-51567912017-01-02 Novel Biomarker MicroRNAs for Subtyping of Acute Coronary Syndrome: A Bioinformatics Approach Zhu, Yujie Lin, Yuxin Yan, Wenying Sun, Zhandong Jiang, Zhi Shen, Bairong Jiang, Xiaoqian Shi, Jingjing Biomed Res Int Research Article Acute coronary syndrome (ACS) is a life-threatening disease that affects more than half a million people in United States. We currently lack molecular biomarkers to distinguish the unstable angina (UA) and acute myocardial infarction (AMI), which are the two subtypes of ACS. MicroRNAs play significant roles in biological processes and serve as good candidates for biomarkers. In this work, we collected microRNA datasets from the Gene Expression Omnibus database and identified specific microRNAs in different subtypes and universal microRNAs in all subtypes based on our novel network-based bioinformatics approach. These microRNAs were studied for ACS association by pathway enrichment analysis of their target genes. AMI and UA were associated with 27 and 26 microRNAs, respectively, nine of them were detected for both AMI and UA, and five from each subtype had been reported previously. The remaining 22 and 21 microRNAs are novel microRNA biomarkers for AMI and UA, respectively. The findings are then supported by pathway enrichment analysis of the targets of these microRNAs. These novel microRNAs deserve further validation and will be helpful for personalized ACS diagnosis. Hindawi Publishing Corporation 2016 2016-12-01 /pmc/articles/PMC5156791/ /pubmed/28044128 http://dx.doi.org/10.1155/2016/4618323 Text en Copyright © 2016 Yujie Zhu et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Zhu, Yujie Lin, Yuxin Yan, Wenying Sun, Zhandong Jiang, Zhi Shen, Bairong Jiang, Xiaoqian Shi, Jingjing Novel Biomarker MicroRNAs for Subtyping of Acute Coronary Syndrome: A Bioinformatics Approach |
title | Novel Biomarker MicroRNAs for Subtyping of Acute Coronary Syndrome: A Bioinformatics Approach |
title_full | Novel Biomarker MicroRNAs for Subtyping of Acute Coronary Syndrome: A Bioinformatics Approach |
title_fullStr | Novel Biomarker MicroRNAs for Subtyping of Acute Coronary Syndrome: A Bioinformatics Approach |
title_full_unstemmed | Novel Biomarker MicroRNAs for Subtyping of Acute Coronary Syndrome: A Bioinformatics Approach |
title_short | Novel Biomarker MicroRNAs for Subtyping of Acute Coronary Syndrome: A Bioinformatics Approach |
title_sort | novel biomarker micrornas for subtyping of acute coronary syndrome: a bioinformatics approach |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5156791/ https://www.ncbi.nlm.nih.gov/pubmed/28044128 http://dx.doi.org/10.1155/2016/4618323 |
work_keys_str_mv | AT zhuyujie novelbiomarkermicrornasforsubtypingofacutecoronarysyndromeabioinformaticsapproach AT linyuxin novelbiomarkermicrornasforsubtypingofacutecoronarysyndromeabioinformaticsapproach AT yanwenying novelbiomarkermicrornasforsubtypingofacutecoronarysyndromeabioinformaticsapproach AT sunzhandong novelbiomarkermicrornasforsubtypingofacutecoronarysyndromeabioinformaticsapproach AT jiangzhi novelbiomarkermicrornasforsubtypingofacutecoronarysyndromeabioinformaticsapproach AT shenbairong novelbiomarkermicrornasforsubtypingofacutecoronarysyndromeabioinformaticsapproach AT jiangxiaoqian novelbiomarkermicrornasforsubtypingofacutecoronarysyndromeabioinformaticsapproach AT shijingjing novelbiomarkermicrornasforsubtypingofacutecoronarysyndromeabioinformaticsapproach |