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Four microRNAs Signature for Survival Prognosis in Colon Cancer using TCGA Data

This study aims to develop microRNA expression signature for colon cancer survival prognosis based on the Cancer Genomic Common database. miRNAs levels between colon cancer and non-cancer tissues were screened by t-test (p < 0.05). Kaplan-Meier survival method was used to discriminate survival si...

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Detalles Bibliográficos
Autores principales: Xu, Jian, Zhao, Jian, Zhang, Rui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5156922/
https://www.ncbi.nlm.nih.gov/pubmed/27974852
http://dx.doi.org/10.1038/srep38306
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author Xu, Jian
Zhao, Jian
Zhang, Rui
author_facet Xu, Jian
Zhao, Jian
Zhang, Rui
author_sort Xu, Jian
collection PubMed
description This study aims to develop microRNA expression signature for colon cancer survival prognosis based on the Cancer Genomic Common database. miRNAs levels between colon cancer and non-cancer tissues were screened by t-test (p < 0.05). Kaplan-Meier survival method was used to discriminate survival significant miRNAs, followed by miRNAs index accumulation to power the miRNAs-survival reliability. In the end, we test the selected miRNAs in HT126 colon cancer cells to validate its anti-cancer effect. The study identified a 84-miRNAs signature. Of the above 84 miRNAs, we got four miRNAs which were survival associated by using ROC curve method and Kaplan-Meier survival method (p < 0.001). The result showed that low risk group had quite a low death rate, the survival rate was over 80%. The high risk group had survival rate lower than 20%, which was also extremely lower than the overall survival rate. In the HT126 cells study, cell growth assay showed miR-130a sponge inhibited colon cancer cells growth and sensitized the anti-cancer drug effect of 5-FU to blocked cancer cell growth. We developed a prognostic 4-microRNA expression signature for colon cancer patient survival, and validated miR-130a sponge could sensitized 5-FU anti-cancer effect.
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spelling pubmed-51569222016-12-20 Four microRNAs Signature for Survival Prognosis in Colon Cancer using TCGA Data Xu, Jian Zhao, Jian Zhang, Rui Sci Rep Article This study aims to develop microRNA expression signature for colon cancer survival prognosis based on the Cancer Genomic Common database. miRNAs levels between colon cancer and non-cancer tissues were screened by t-test (p < 0.05). Kaplan-Meier survival method was used to discriminate survival significant miRNAs, followed by miRNAs index accumulation to power the miRNAs-survival reliability. In the end, we test the selected miRNAs in HT126 colon cancer cells to validate its anti-cancer effect. The study identified a 84-miRNAs signature. Of the above 84 miRNAs, we got four miRNAs which were survival associated by using ROC curve method and Kaplan-Meier survival method (p < 0.001). The result showed that low risk group had quite a low death rate, the survival rate was over 80%. The high risk group had survival rate lower than 20%, which was also extremely lower than the overall survival rate. In the HT126 cells study, cell growth assay showed miR-130a sponge inhibited colon cancer cells growth and sensitized the anti-cancer drug effect of 5-FU to blocked cancer cell growth. We developed a prognostic 4-microRNA expression signature for colon cancer patient survival, and validated miR-130a sponge could sensitized 5-FU anti-cancer effect. Nature Publishing Group 2016-12-15 /pmc/articles/PMC5156922/ /pubmed/27974852 http://dx.doi.org/10.1038/srep38306 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Xu, Jian
Zhao, Jian
Zhang, Rui
Four microRNAs Signature for Survival Prognosis in Colon Cancer using TCGA Data
title Four microRNAs Signature for Survival Prognosis in Colon Cancer using TCGA Data
title_full Four microRNAs Signature for Survival Prognosis in Colon Cancer using TCGA Data
title_fullStr Four microRNAs Signature for Survival Prognosis in Colon Cancer using TCGA Data
title_full_unstemmed Four microRNAs Signature for Survival Prognosis in Colon Cancer using TCGA Data
title_short Four microRNAs Signature for Survival Prognosis in Colon Cancer using TCGA Data
title_sort four micrornas signature for survival prognosis in colon cancer using tcga data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5156922/
https://www.ncbi.nlm.nih.gov/pubmed/27974852
http://dx.doi.org/10.1038/srep38306
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