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Characterization of the Complete Mitochondrial Genome of Leucoma salicis (Lepidoptera: Lymantriidae) and Comparison with Other Lepidopteran Insects

The complete mitochondrial genome (mitogenome) of Leucoma salicis (Lepidoptera: Lymantriidae) was sequenced and annotated. It is a circular molecule of 15,334 bp, containing the 37 genes usually present in insect mitogenomes. All protein-coding genes (PCGs) are initiated by ATN codons, other than co...

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Autores principales: Sun, Yu-Xuan, Wang, Lei, Wei, Guo-Qing, Qian, Cen, Dai, Li-Shang, Sun, Yu, Abbas, Muhammad Nadeem, Zhu, Bao-Jian, Liu, Chao-Liang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5156926/
https://www.ncbi.nlm.nih.gov/pubmed/27974854
http://dx.doi.org/10.1038/srep39153
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author Sun, Yu-Xuan
Wang, Lei
Wei, Guo-Qing
Qian, Cen
Dai, Li-Shang
Sun, Yu
Abbas, Muhammad Nadeem
Zhu, Bao-Jian
Liu, Chao-Liang
author_facet Sun, Yu-Xuan
Wang, Lei
Wei, Guo-Qing
Qian, Cen
Dai, Li-Shang
Sun, Yu
Abbas, Muhammad Nadeem
Zhu, Bao-Jian
Liu, Chao-Liang
author_sort Sun, Yu-Xuan
collection PubMed
description The complete mitochondrial genome (mitogenome) of Leucoma salicis (Lepidoptera: Lymantriidae) was sequenced and annotated. It is a circular molecule of 15,334 bp, containing the 37 genes usually present in insect mitogenomes. All protein-coding genes (PCGs) are initiated by ATN codons, other than cox1, which is initiated by CGA. Three of the 13 PCGs had an incomplete termination codon, T or TA, while the others terminated with TAA. The relative synonymous codon usage of the 13 protein-coding genes (PCGs) was consistent with those of published lepidopteran sequences. All tRNA genes had typical clover-leaf secondary structures, except for the tRNA(Ser) (AGN), in which the dihydrouridine (DHU) arm could not form a stable stem-loop structure. The A + T-rich region of 325 bp had several distinctive features, including the motif ‘ATAGA’ followed by an 18 bp poly-T stretch, a microsatellite-like (AT)(7) element, and an 11-bp poly-A present immediately upstream of tRNA(Met). Relationships among 32 insect species were determined using Maximum Likelihood (ML), Neighbor Joining (NJ) and Bayesian Inference (BI) phylogenetic methods. These analyses confirm that L. salicis belongs to the Lymantriidae; and that Lymantriidae is a member of Noctuoidea, and is a sister taxon to Erebidae, Nolidae and Noctuidae, most closely related to Erebidae.
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spelling pubmed-51569262016-12-20 Characterization of the Complete Mitochondrial Genome of Leucoma salicis (Lepidoptera: Lymantriidae) and Comparison with Other Lepidopteran Insects Sun, Yu-Xuan Wang, Lei Wei, Guo-Qing Qian, Cen Dai, Li-Shang Sun, Yu Abbas, Muhammad Nadeem Zhu, Bao-Jian Liu, Chao-Liang Sci Rep Article The complete mitochondrial genome (mitogenome) of Leucoma salicis (Lepidoptera: Lymantriidae) was sequenced and annotated. It is a circular molecule of 15,334 bp, containing the 37 genes usually present in insect mitogenomes. All protein-coding genes (PCGs) are initiated by ATN codons, other than cox1, which is initiated by CGA. Three of the 13 PCGs had an incomplete termination codon, T or TA, while the others terminated with TAA. The relative synonymous codon usage of the 13 protein-coding genes (PCGs) was consistent with those of published lepidopteran sequences. All tRNA genes had typical clover-leaf secondary structures, except for the tRNA(Ser) (AGN), in which the dihydrouridine (DHU) arm could not form a stable stem-loop structure. The A + T-rich region of 325 bp had several distinctive features, including the motif ‘ATAGA’ followed by an 18 bp poly-T stretch, a microsatellite-like (AT)(7) element, and an 11-bp poly-A present immediately upstream of tRNA(Met). Relationships among 32 insect species were determined using Maximum Likelihood (ML), Neighbor Joining (NJ) and Bayesian Inference (BI) phylogenetic methods. These analyses confirm that L. salicis belongs to the Lymantriidae; and that Lymantriidae is a member of Noctuoidea, and is a sister taxon to Erebidae, Nolidae and Noctuidae, most closely related to Erebidae. Nature Publishing Group 2016-12-15 /pmc/articles/PMC5156926/ /pubmed/27974854 http://dx.doi.org/10.1038/srep39153 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Sun, Yu-Xuan
Wang, Lei
Wei, Guo-Qing
Qian, Cen
Dai, Li-Shang
Sun, Yu
Abbas, Muhammad Nadeem
Zhu, Bao-Jian
Liu, Chao-Liang
Characterization of the Complete Mitochondrial Genome of Leucoma salicis (Lepidoptera: Lymantriidae) and Comparison with Other Lepidopteran Insects
title Characterization of the Complete Mitochondrial Genome of Leucoma salicis (Lepidoptera: Lymantriidae) and Comparison with Other Lepidopteran Insects
title_full Characterization of the Complete Mitochondrial Genome of Leucoma salicis (Lepidoptera: Lymantriidae) and Comparison with Other Lepidopteran Insects
title_fullStr Characterization of the Complete Mitochondrial Genome of Leucoma salicis (Lepidoptera: Lymantriidae) and Comparison with Other Lepidopteran Insects
title_full_unstemmed Characterization of the Complete Mitochondrial Genome of Leucoma salicis (Lepidoptera: Lymantriidae) and Comparison with Other Lepidopteran Insects
title_short Characterization of the Complete Mitochondrial Genome of Leucoma salicis (Lepidoptera: Lymantriidae) and Comparison with Other Lepidopteran Insects
title_sort characterization of the complete mitochondrial genome of leucoma salicis (lepidoptera: lymantriidae) and comparison with other lepidopteran insects
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5156926/
https://www.ncbi.nlm.nih.gov/pubmed/27974854
http://dx.doi.org/10.1038/srep39153
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