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Bacterial Community Structures in Freshwater Polar Environments of Svalbard
Two thirds of Svalbard archipelago islands in the High Arctic are permanently covered with glacial ice and snow. Polar bacterial communities in the southern part of Svalbard were characterized using an amplicon sequencing approach. A total of 52,928 pyrosequencing reads were analyzed in order to rev...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
the Japanese Society of Microbial Ecology (JSME)/the Japanese Society of Soil Microbiology (JSSM)/the Taiwan Society of Microbial Ecology (TSME)/the Japanese Society of Plant Microbe Interactions (JSPMI)
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5158112/ https://www.ncbi.nlm.nih.gov/pubmed/27725345 http://dx.doi.org/10.1264/jsme2.ME16074 |
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author | Ntougias, Spyridon Polkowska, Żaneta Nikolaki, Sofia Dionyssopoulou, Eva Stathopoulou, Panagiota Doudoumis, Vangelis Ruman, Marek Kozak, Katarzyna Namieśnik, Jacek Tsiamis, George |
author_facet | Ntougias, Spyridon Polkowska, Żaneta Nikolaki, Sofia Dionyssopoulou, Eva Stathopoulou, Panagiota Doudoumis, Vangelis Ruman, Marek Kozak, Katarzyna Namieśnik, Jacek Tsiamis, George |
author_sort | Ntougias, Spyridon |
collection | PubMed |
description | Two thirds of Svalbard archipelago islands in the High Arctic are permanently covered with glacial ice and snow. Polar bacterial communities in the southern part of Svalbard were characterized using an amplicon sequencing approach. A total of 52,928 pyrosequencing reads were analyzed in order to reveal bacterial community structures in stream and lake surface water samples from the Fuglebekken and Revvatnet basins of southern Svalbard. Depending on the samples examined, bacterial communities at a higher taxonomic level mainly consisted either of Bacteroidetes, Betaproteobacteria, and Microgenomates (OP11) or Planctomycetes, Betaproteobacteria, and Bacteroidetes members, whereas a population of Microgenomates was prominent in 2 samples. At the lower taxonomic level, bacterial communities mostly comprised Microgenomates, Comamonadaceae, Flavobacteriaceae, Legionellales, SM2F11, Parcubacteria (OD1), and TM7 members at different proportions in each sample. The abundance of OTUs shared in common among samples was greater than 70%, with the exception of samples in which the proliferation of Planctomycetaceae, Phycisphaeraceae, and Candidatus Methylacidiphilum spp. lowered their relative abundance. A multi-variable analysis indicated that As, Pb, and Sb were the main environmental factors influencing bacterial profiles. We concluded that the bacterial communities in the polar aquatic ecosystems examined mainly consisted of freshwater and marine microorganisms involved in detritus mineralization, with a high proportion of zooplankton-associated taxa also being identified. |
format | Online Article Text |
id | pubmed-5158112 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | the Japanese Society of Microbial Ecology (JSME)/the Japanese Society of Soil Microbiology (JSSM)/the Taiwan Society of Microbial Ecology (TSME)/the Japanese Society of Plant Microbe Interactions (JSPMI) |
record_format | MEDLINE/PubMed |
spelling | pubmed-51581122016-12-20 Bacterial Community Structures in Freshwater Polar Environments of Svalbard Ntougias, Spyridon Polkowska, Żaneta Nikolaki, Sofia Dionyssopoulou, Eva Stathopoulou, Panagiota Doudoumis, Vangelis Ruman, Marek Kozak, Katarzyna Namieśnik, Jacek Tsiamis, George Microbes Environ Articles Two thirds of Svalbard archipelago islands in the High Arctic are permanently covered with glacial ice and snow. Polar bacterial communities in the southern part of Svalbard were characterized using an amplicon sequencing approach. A total of 52,928 pyrosequencing reads were analyzed in order to reveal bacterial community structures in stream and lake surface water samples from the Fuglebekken and Revvatnet basins of southern Svalbard. Depending on the samples examined, bacterial communities at a higher taxonomic level mainly consisted either of Bacteroidetes, Betaproteobacteria, and Microgenomates (OP11) or Planctomycetes, Betaproteobacteria, and Bacteroidetes members, whereas a population of Microgenomates was prominent in 2 samples. At the lower taxonomic level, bacterial communities mostly comprised Microgenomates, Comamonadaceae, Flavobacteriaceae, Legionellales, SM2F11, Parcubacteria (OD1), and TM7 members at different proportions in each sample. The abundance of OTUs shared in common among samples was greater than 70%, with the exception of samples in which the proliferation of Planctomycetaceae, Phycisphaeraceae, and Candidatus Methylacidiphilum spp. lowered their relative abundance. A multi-variable analysis indicated that As, Pb, and Sb were the main environmental factors influencing bacterial profiles. We concluded that the bacterial communities in the polar aquatic ecosystems examined mainly consisted of freshwater and marine microorganisms involved in detritus mineralization, with a high proportion of zooplankton-associated taxa also being identified. the Japanese Society of Microbial Ecology (JSME)/the Japanese Society of Soil Microbiology (JSSM)/the Taiwan Society of Microbial Ecology (TSME)/the Japanese Society of Plant Microbe Interactions (JSPMI) 2016-12 2016-09-30 /pmc/articles/PMC5158112/ /pubmed/27725345 http://dx.doi.org/10.1264/jsme2.ME16074 Text en Copyright © 2016 by Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions. http://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Ntougias, Spyridon Polkowska, Żaneta Nikolaki, Sofia Dionyssopoulou, Eva Stathopoulou, Panagiota Doudoumis, Vangelis Ruman, Marek Kozak, Katarzyna Namieśnik, Jacek Tsiamis, George Bacterial Community Structures in Freshwater Polar Environments of Svalbard |
title | Bacterial Community Structures in Freshwater Polar Environments of Svalbard |
title_full | Bacterial Community Structures in Freshwater Polar Environments of Svalbard |
title_fullStr | Bacterial Community Structures in Freshwater Polar Environments of Svalbard |
title_full_unstemmed | Bacterial Community Structures in Freshwater Polar Environments of Svalbard |
title_short | Bacterial Community Structures in Freshwater Polar Environments of Svalbard |
title_sort | bacterial community structures in freshwater polar environments of svalbard |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5158112/ https://www.ncbi.nlm.nih.gov/pubmed/27725345 http://dx.doi.org/10.1264/jsme2.ME16074 |
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