Cargando…

Alu repeats as transcriptional regulatory platforms in macrophage responses to M. tuberculosis infection

To understand the epigenetic regulation of transcriptional response of macrophages during early-stage M. tuberculosis (Mtb) infection, we performed ChIPseq analysis of H3K4 monomethylation (H3K4me1), a marker of poised or active enhancers. De novo H3K4me1 peaks in infected cells were associated with...

Descripción completa

Detalles Bibliográficos
Autores principales:	Bouttier, Manuella, Laperriere, David, Memari, Babak, Mangiapane, Joseph, Fiore, Amanda, Mitchell, Eric, Verway, Mark, Behr, Marcel A., Sladek, Robert, Barreiro, Luis B., Mader, Sylvie, White, John H.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2016
Materias:	Gene regulation, Chromatin and Epigenetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5159539/ https://www.ncbi.nlm.nih.gov/pubmed/27604870 http://dx.doi.org/10.1093/nar/gkw782

Ejemplares similares

Ligand-dependent corepressor contributes to transcriptional repression by C(2)H(2) zinc-finger transcription factor ZBRK1 through association with KRAB-associated protein-1
por: Calderon, Mario R., et al.
Publicado: (2014)

High-throughput sequence-based epigenomic analysis of Alu repeats in human cerebellum
por: Xie, Hehuang, et al.
Publicado: (2009)

The ‘Alu-ome’ shapes the epigenetic environment of regulatory elements controlling cellular defense
por: Costallat, Mickael, et al.
Publicado: (2022)

Alu retrotransposons promote differentiation of human carcinoma cells through the aryl hydrocarbon receptor
por: Morales-Hernández, Antonio, et al.
Publicado: (2016)

Identification of RNA polymerase III-transcribed Alu loci by computational screening of RNA-Seq data
por: Conti, Anastasia, et al.
Publicado: (2015)

Sam68 binds Alu-rich introns in SMN and promotes pre-mRNA circularization
por: Pagliarini, Vittoria, et al.
Publicado: (2020)

Identification of a binding motif specific to HNF4 by comparative analysis of multiple nuclear receptors
por: Fang, Bin, et al.
Publicado: (2012)

Telomeric repeats act as nucleosome-disfavouring sequences in vivo
por: Ichikawa, Yuichi, et al.
Publicado: (2014)

Single-cell profiling reveals that eRNA accumulation at enhancer–promoter loops is not required to sustain transcription
por: Rahman, Samir, et al.
Publicado: (2017)

CTG repeat-targeting oligonucleotides for down-regulating Huntingtin expression
por: Zaghloul, Eman M., et al.
Publicado: (2017)

Developmental remodelling of non-CG methylation at satellite DNA repeats
por: Ross, Samuel E, et al.
Publicado: (2020)

Short tandem repeats are important contributors to silencer elements in T cells
por: Hussain, Saadat, et al.
Publicado: (2023)

Telomeric repeat silencing in germ cells is essential for early development in Drosophila
por: Morgunova, Valeriya, et al.
Publicado: (2015)

Vimentin binds to G-quadruplex repeats found at telomeres and gene promoters
por: Ceschi, Silvia, et al.
Publicado: (2022)

Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus
por: Deng, Ling, et al.
Publicado: (2012)

POT-3 preferentially binds the terminal DNA-repeat on the telomeric G-overhang
por: Yu, Xupeng, et al.
Publicado: (2022)

Depositing centromere repeats induces heritable intragenic heterochromatin establishment and spreading in Arabidopsis
por: Liu, Zhang-Wei, et al.
Publicado: (2023)

Hyperexpansion of GAA repeats affects post-initiation steps of FXN transcription in Friedreich’s ataxia
por: Kim, Eunah, et al.
Publicado: (2011)

Implication of repeat insertion domains in the trans-activity of the long non-coding RNA ANRIL
por: Alfeghaly, Charbel, et al.
Publicado: (2021)

Methylation-state-specific recognition of histones by the MBT repeat protein L3MBTL2
por: Guo, Yahong, et al.
Publicado: (2009)

DICER regulates the expression of major satellite repeat transcripts and meiotic chromosome segregation during spermatogenesis
por: Yadav, Ram Prakash, et al.
Publicado: (2020)

Histone H1 depletion triggers an interferon response in cancer cells via activation of heterochromatic repeats
por: Izquierdo-Bouldstridge, Andrea, et al.
Publicado: (2017)

PML bodies provide an important platform for the maintenance of telomeric chromatin integrity in embryonic stem cells
por: Chang, Fiona T. M., et al.
Publicado: (2013)

Mechanism of allele-selective inhibition of huntingtin expression by duplex RNAs that target CAG repeats: function through the RNAi pathway
por: Hu, Jiaxin, et al.
Publicado: (2012)

Long intronic GAA•TTC repeats induce epigenetic changes and reporter gene silencing in a molecular model of Friedreich ataxia
por: Soragni, E., et al.
Publicado: (2008)

The ATP binding site of the chromatin remodeling homolog Lsh is required for nucleosome density and de novo DNA methylation at repeat sequences
por: Ren, Jianke, et al.
Publicado: (2015)

Paf1 and Ctr9, core components of the PAF1 complex, maintain low levels of telomeric repeat containing RNA
por: Rodrigues, Joana, et al.
Publicado: (2018)

Telomeric repeat-containing RNA/G-quadruplex-forming sequences cause genome-wide alteration of gene expression in human cancer cells in vivo
por: Hirashima, Kyotaro, et al.
Publicado: (2015)

m6A RNA methylation of major satellite repeat transcripts facilitates chromatin association and RNA:DNA hybrid formation in mouse heterochromatin
por: Duda, Katarzyna J, et al.
Publicado: (2021)

The histone chaperone sNASP binds a conserved peptide motif within the globular core of histone H3 through its TPR repeats
por: Bowman, Andrew, et al.
Publicado: (2016)

The nucleoid-associated proteins H-NS and FIS modulate the DNA supercoiling response of the pel genes, the major virulence factors in the plant pathogen bacterium Dickeya dadantii
por: Ouafa, Zghidi-Abouzid, et al.
Publicado: (2012)

The nucleoid-associated protein IHF acts as a ‘transcriptional domainin’ protein coordinating the bacterial virulence traits with global transcription
por: Reverchon, Sylvie, et al.
Publicado: (2020)

The high mobility group A2 protein epigenetically silences the Cdh1 gene during epithelial-to-mesenchymal transition
por: Tan, E-Jean, et al.
Publicado: (2015)

Bacterial genome architecture shapes global transcriptional regulation by DNA supercoiling
por: El Houdaigui, Bilal, et al.
Publicado: (2019)

Species-specific recruitment of transcription factors dictates toxin expression
por: Trouillon, Julian, et al.
Publicado: (2020)

Heat shock represses rRNA synthesis by inactivation of TIF-IA and lncRNA-dependent changes in nucleosome positioning
por: Zhao, Zhongliang, et al.
Publicado: (2016)

Nuclear receptor activation shapes spatial genome organization essential for gene expression control: lessons learned from the vitamin D receptor
por: Warwick, Timothy, et al.
Publicado: (2022)

Bimodal high-affinity association of Brd4 with murine leukemia virus integrase and mononucleosomes
por: Larue, Ross C., et al.
Publicado: (2014)

NIR, an inhibitor of histone acetyltransferases, regulates transcription factor TAp63 and is controlled by the cell cycle
por: Heyne, Kristina, et al.
Publicado: (2010)

Two-step interrogation then recognition of DNA binding site by Integration Host Factor: an architectural DNA-bending protein
por: Velmurugu, Yogambigai, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_s31dl3btl1gsbp1ogu7h25buvo