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A Data Fusion Approach to Enhance Association Study in Epilepsy

Among the scientific challenges posed by complex diseases with a strong genetic component, two stand out. One is unveiling the role of rare and common genetic variants; the other is the design of classification models to improve clinical diagnosis and predictive models for prognosis and personalized...

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Autores principales: Marini, Simone, Limongelli, Ivan, Rizzo, Ettore, Malovini, Alberto, Errichiello, Edoardo, Vetro, Annalisa, Da, Tan, Zuffardi, Orsetta, Bellazzi, Riccardo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5161322/
https://www.ncbi.nlm.nih.gov/pubmed/27984588
http://dx.doi.org/10.1371/journal.pone.0164940
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author Marini, Simone
Limongelli, Ivan
Rizzo, Ettore
Malovini, Alberto
Errichiello, Edoardo
Vetro, Annalisa
Da, Tan
Zuffardi, Orsetta
Bellazzi, Riccardo
author_facet Marini, Simone
Limongelli, Ivan
Rizzo, Ettore
Malovini, Alberto
Errichiello, Edoardo
Vetro, Annalisa
Da, Tan
Zuffardi, Orsetta
Bellazzi, Riccardo
author_sort Marini, Simone
collection PubMed
description Among the scientific challenges posed by complex diseases with a strong genetic component, two stand out. One is unveiling the role of rare and common genetic variants; the other is the design of classification models to improve clinical diagnosis and predictive models for prognosis and personalized therapies. In this paper, we present a data fusion framework merging gene, domain, pathway and protein-protein interaction data related to a next generation sequencing epilepsy gene panel. Our method allows integrating association information from multiple genomic sources and aims at highlighting the set of common and rare variants that are capable to trigger the occurrence of a complex disease. When compared to other approaches, our method shows better performances in classifying patients affected by epilepsy.
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spelling pubmed-51613222017-01-04 A Data Fusion Approach to Enhance Association Study in Epilepsy Marini, Simone Limongelli, Ivan Rizzo, Ettore Malovini, Alberto Errichiello, Edoardo Vetro, Annalisa Da, Tan Zuffardi, Orsetta Bellazzi, Riccardo PLoS One Research Article Among the scientific challenges posed by complex diseases with a strong genetic component, two stand out. One is unveiling the role of rare and common genetic variants; the other is the design of classification models to improve clinical diagnosis and predictive models for prognosis and personalized therapies. In this paper, we present a data fusion framework merging gene, domain, pathway and protein-protein interaction data related to a next generation sequencing epilepsy gene panel. Our method allows integrating association information from multiple genomic sources and aims at highlighting the set of common and rare variants that are capable to trigger the occurrence of a complex disease. When compared to other approaches, our method shows better performances in classifying patients affected by epilepsy. Public Library of Science 2016-12-16 /pmc/articles/PMC5161322/ /pubmed/27984588 http://dx.doi.org/10.1371/journal.pone.0164940 Text en © 2016 Marini et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Marini, Simone
Limongelli, Ivan
Rizzo, Ettore
Malovini, Alberto
Errichiello, Edoardo
Vetro, Annalisa
Da, Tan
Zuffardi, Orsetta
Bellazzi, Riccardo
A Data Fusion Approach to Enhance Association Study in Epilepsy
title A Data Fusion Approach to Enhance Association Study in Epilepsy
title_full A Data Fusion Approach to Enhance Association Study in Epilepsy
title_fullStr A Data Fusion Approach to Enhance Association Study in Epilepsy
title_full_unstemmed A Data Fusion Approach to Enhance Association Study in Epilepsy
title_short A Data Fusion Approach to Enhance Association Study in Epilepsy
title_sort data fusion approach to enhance association study in epilepsy
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5161322/
https://www.ncbi.nlm.nih.gov/pubmed/27984588
http://dx.doi.org/10.1371/journal.pone.0164940
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