Cargando…

Discovering Genome-Wide Tag SNPs Based on the Mutual Information of the Variants

Exploring linkage disequilibrium (LD) patterns among the single nucleotide polymorphism (SNP) sites can improve the accuracy and cost-effectiveness of genomic association studies, whereby representative (tag) SNPs are identified to sufficiently represent the genomic diversity in populations. There h...

Descripción completa

Detalles Bibliográficos
Autores principales:	Elmas, Abdulkadir, Ou Yang, Tai-Hsien, Wang, Xiaodong, Anastassiou, Dimitris
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2016
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5161470/ https://www.ncbi.nlm.nih.gov/pubmed/27992465 http://dx.doi.org/10.1371/journal.pone.0167994

Ejemplares similares

Capability of common SNPs to tag rare variants
por: Sun, Xiangqing, et al.
Publicado: (2011)

Variable window binding for mutually exclusive alternative splicing
por: Anastassiou, Dimitris, et al.
Publicado: (2006)

Synergy Disequilibrium Plots: graphical visualization of pairwise synergies and redundancies of SNPs with respect to a phenotype
por: Watkinson, John, et al.
Publicado: (2009)

Biomolecular Events in Cancer Revealed by Attractor Metagenes
por: Cheng, Wei-Yi, et al.
Publicado: (2013)

Evaluating information content of SNPs for sample-tagging in re-sequencing projects
por: Hu, Hao, et al.
Publicado: (2015)

Genome-wide epistasis and co-selection study using mutual information
por: Pensar, Johan, et al.
Publicado: (2019)

Shrunken methodology to genome-wide SNPs selection and construction of SNPs networks
por: Liu, Yang, et al.
Publicado: (2010)

A model-based approach to selection of tag SNPs
por: Nicolas, Pierre, et al.
Publicado: (2006)

Meta-analysis of expression and methylation signatures indicates a stress-related epigenetic mechanism in multiple neuropsychiatric disorders
por: Zhu, Kaiyi, et al.
Publicado: (2019)

Discovering candidate SNPs for resilience breeding of red clover
por: Osterman, Johanna, et al.
Publicado: (2022)

Information-theoretic identification of predictive SNPs and supervised visualization of genome-wide association studies
por: Bhasi, Kavitha, et al.
Publicado: (2006)

Genome-wide generation and genotyping of informative SNPs to scan molecular signatures for seed yield in chickpea
por: Basu, Udita, et al.
Publicado: (2018)

Identifying tagging SNPs for African specific genetic variation from the African Diaspora Genome
por: Johnston, Henry Richard, et al.
Publicado: (2017)

Genome-wide screen for universal individual identification SNPs based on the HapMap and 1000 Genomes databases
por: Huang, Erwen, et al.
Publicado: (2018)

A Genome-Wide Investigation of SNPs and CNVs in Schizophrenia
por: Need, Anna C., et al.
Publicado: (2009)

GENOME-WIDE ASSOCIATION STUDY OF EXTREME HUMAN LONGEVITY DISCOVERS UNCOMMON LONGEVITY VARIANTS
por: Gurinovich, Anastasia, et al.
Publicado: (2019)

Mutual information and variants for protein domain-domain contact prediction
por: Gomes, Mireille, et al.
Publicado: (2012)

Selecting additional tag SNPs for tolerating missing data in genotyping
por: Huang, Yao-Ting, et al.
Publicado: (2005)

QuickSNP: an automated web server for selection of tagSNPs
por: Grover, Deepak, et al.
Publicado: (2007)

Genomic Selection for Drought Tolerance Using Genome-Wide SNPs in Maize
por: Shikha, Mittal, et al.
Publicado: (2017)

Social tagging for linking data across environments: a new approach to discovering information online
por: Pennington, Diane, et al.
Publicado: (2018)

Correction: A Genome-Wide Investigation of SNPs and CNVs in Schizophrenia
por: Need, Anna C., et al.
Publicado: (2009)

Mixture SNPs effect on phenotype in genome-wide association studies
por: Wang, Ling, et al.
Publicado: (2015)

Genome-wide identification of SNPs associated with body weight in yak
por: Jiang, Hui, et al.
Publicado: (2022)

A Measurement of $R_b$ using Mutually Exclusive Tags
por: Barate, R, et al.
Publicado: (1997)

Genome-Wide Identification of N6-Methyladenosine Associated SNPs as Potential Functional Variants for Type 1 Diabetes
por: Chen, Yang, et al.
Publicado: (2022)

Reconstruction of novel transcription factor regulons through inference of their binding sites
por: Elmas, Abdulkadir, et al.
Publicado: (2015)

Learned Practical Guidelines for Evaluating Conditional Entropy and Mutual Information in Discovering Major Factors of Response-vs.-Covariate Dynamics
por: Chen, Ting-Li, et al.
Publicado: (2022)

A Two-Stage Mutual Information Based Bayesian Lasso Algorithm for Multi-Locus Genome-Wide Association Studies
por: Guo, Hongping, et al.
Publicado: (2020)

The Average Mutual Information Profile as a Genomic Signature
por: Bauer, Mark, et al.
Publicado: (2008)

Gene Regulatory Network Reconstruction Using Conditional Mutual Information
por: Liang, Kuo-Ching, et al.
Publicado: (2008)

Whole-Genome Resequencing Analysis of Hanwoo and Yanbian Cattle to Identify Genome-Wide SNPs and Signatures of Selection
por: Choi, Jung-Woo, et al.
Publicado: (2015)

RTEL1 tagging SNPs and haplotypes were associated with glioma development
por: Li, Gang, et al.
Publicado: (2013)

High-Throughput SNP Genotyping: Combining Tag SNPs and Molecular Beacons
por: Barreiro, Luis B., et al.
Publicado: (2009)

Assessing effectiveness of many-objective evolutionary algorithms for selection of tag SNPs
por: Moqa, Rashad, et al.
Publicado: (2022)

Genomic diversity dynamics in conserved chicken populations are revealed by genome-wide SNPs
por: Zhang, Mengmeng, et al.
Publicado: (2018)

Genome-wide analysis of microRNA targeting impacted by SNPs in cucumber genome
por: Ling, Jian, et al.
Publicado: (2017)

Discovering Homogeneous Groups from Geo-Tagged Videos
por: Di, Xuejing, et al.
Publicado: (2023)

Genome-wide association study for SNPs associated with PCOS in human patients
por: Chen, Li, et al.
Publicado: (2017)

Maximum parsimony xor haplotyping by sparse dictionary selection
por: Elmas, Abdulkadir, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_la4vetdeht4uusqpgvsgj8rli9