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Highlighting Astyanax Species Diversity through DNA Barcoding
DNA barcoding has been used extensively to solve taxonomic questions and identify new species. Neotropical fishes are found in a wide variety of shapes and sizes, with a large number of species yet to be described, many of which are very difficult to identify. Characidae is the most species-rich fam...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5167228/ https://www.ncbi.nlm.nih.gov/pubmed/27992537 http://dx.doi.org/10.1371/journal.pone.0167203 |
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author | Rossini, Bruno César Oliveira, Carlos Alexandre Miranda de Melo, Filipe Augusto Gonçalves Bertaco, Vinicius de Araújo de Astarloa, Juan M. Díaz Rosso, Juan J. Foresti, Fausto Oliveira, Claudio |
author_facet | Rossini, Bruno César Oliveira, Carlos Alexandre Miranda de Melo, Filipe Augusto Gonçalves Bertaco, Vinicius de Araújo de Astarloa, Juan M. Díaz Rosso, Juan J. Foresti, Fausto Oliveira, Claudio |
author_sort | Rossini, Bruno César |
collection | PubMed |
description | DNA barcoding has been used extensively to solve taxonomic questions and identify new species. Neotropical fishes are found in a wide variety of shapes and sizes, with a large number of species yet to be described, many of which are very difficult to identify. Characidae is the most species-rich family of the Characiformes, and many of its genera are affected by taxonomic uncertainties, including the widely-distributed, species-rich genus Astyanax. In this study, we present an extensive analysis of Astyanax covering almost its entire area of occurrence, based on DNA barcoding. The use of different approaches (ABGD, GMYC and BIN) to the clustering of the sequences revealed ample consistency in the results obtained by the initial cutoff value of 2% divergence for putative species in the Neighbor-Joining analysis using the Kimura-2-parameter model. The results indicate the existence of five Astyanax lineages. Some groups, such as that composed by the trans-Andean forms, are mostly composed of well-defined species, and in others a number of nominal species are clustered together, hampering the delimitation of species, which in many cases proved impossible. The results confirm the extreme complexity of the systematics of the genus Astyanax and show that DNA barcoding can be an useful tool to address these complexes questions. |
format | Online Article Text |
id | pubmed-5167228 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-51672282017-01-04 Highlighting Astyanax Species Diversity through DNA Barcoding Rossini, Bruno César Oliveira, Carlos Alexandre Miranda de Melo, Filipe Augusto Gonçalves Bertaco, Vinicius de Araújo de Astarloa, Juan M. Díaz Rosso, Juan J. Foresti, Fausto Oliveira, Claudio PLoS One Research Article DNA barcoding has been used extensively to solve taxonomic questions and identify new species. Neotropical fishes are found in a wide variety of shapes and sizes, with a large number of species yet to be described, many of which are very difficult to identify. Characidae is the most species-rich family of the Characiformes, and many of its genera are affected by taxonomic uncertainties, including the widely-distributed, species-rich genus Astyanax. In this study, we present an extensive analysis of Astyanax covering almost its entire area of occurrence, based on DNA barcoding. The use of different approaches (ABGD, GMYC and BIN) to the clustering of the sequences revealed ample consistency in the results obtained by the initial cutoff value of 2% divergence for putative species in the Neighbor-Joining analysis using the Kimura-2-parameter model. The results indicate the existence of five Astyanax lineages. Some groups, such as that composed by the trans-Andean forms, are mostly composed of well-defined species, and in others a number of nominal species are clustered together, hampering the delimitation of species, which in many cases proved impossible. The results confirm the extreme complexity of the systematics of the genus Astyanax and show that DNA barcoding can be an useful tool to address these complexes questions. Public Library of Science 2016-12-19 /pmc/articles/PMC5167228/ /pubmed/27992537 http://dx.doi.org/10.1371/journal.pone.0167203 Text en © 2016 Rossini et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Rossini, Bruno César Oliveira, Carlos Alexandre Miranda de Melo, Filipe Augusto Gonçalves Bertaco, Vinicius de Araújo de Astarloa, Juan M. Díaz Rosso, Juan J. Foresti, Fausto Oliveira, Claudio Highlighting Astyanax Species Diversity through DNA Barcoding |
title | Highlighting Astyanax Species Diversity through DNA Barcoding |
title_full | Highlighting Astyanax Species Diversity through DNA Barcoding |
title_fullStr | Highlighting Astyanax Species Diversity through DNA Barcoding |
title_full_unstemmed | Highlighting Astyanax Species Diversity through DNA Barcoding |
title_short | Highlighting Astyanax Species Diversity through DNA Barcoding |
title_sort | highlighting astyanax species diversity through dna barcoding |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5167228/ https://www.ncbi.nlm.nih.gov/pubmed/27992537 http://dx.doi.org/10.1371/journal.pone.0167203 |
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