Cargando…

Workflow for Genome-Wide Determination of Pre-mRNA Splicing Efficiency from Yeast RNA-seq Data

Pre-mRNA splicing represents an important regulatory layer of eukaryotic gene expression. In the simple budding yeast Saccharomyces cerevisiae, about one-third of all mRNA molecules undergo splicing, and splicing efficiency is tightly regulated, for example, during meiotic differentiation. S. cerevi...

Descripción completa

Detalles Bibliográficos
Autores principales:	Převorovský, Martin, Hálová, Martina, Abrhámová, Kateřina, Libus, Jiří, Folk, Petr
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Hindawi Publishing Corporation 2016
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5168555/ https://www.ncbi.nlm.nih.gov/pubmed/28050562 http://dx.doi.org/10.1155/2016/4783841

Ejemplares similares

Introns provide a platform for intergenic regulatory feedback of RPL22 paralogs in yeast
por: Abrhámová, Kateřina, et al.
Publicado: (2018)

Nineteen complex–related factor Prp45 is required for the early stages of cotranscriptional spliceosome assembly
por: Hálová, Martina, et al.
Publicado: (2017)

Fission Yeast CSL Proteins Function as Transcription Factors
por: Oravcová, Martina, et al.
Publicado: (2013)

Tetracycline aptamer-controlled regulation of pre-mRNA splicing in yeast
por: Weigand, Julia E., et al.
Publicado: (2007)

Fission Yeast CSL Transcription Factors: Mapping Their Target Genes and Biological Roles
por: Převorovský, Martin, et al.
Publicado: (2015)

RNA catalyzes nuclear pre-mRNA splicing
por: Fica, Sebastian M., et al.
Publicado: (2013)

Pre-mRNA Splicing in the Nuclear Landscape
por: Carrocci, Tucker J., et al.
Publicado: (2020)

Transcript Specificity in Yeast Pre-mRNA Splicing Revealed by Mutations in Core Spliceosomal Components
por: Pleiss, Jeffrey A, et al.
Publicado: (2007)

RNA editing in nascent RNA affects pre-mRNA splicing
por: Hsiao, Yun-Hua Esther, et al.
Publicado: (2018)

Vex-seq: high-throughput identification of the impact of genetic variation on pre-mRNA splicing efficiency
por: Adamson, Scott I., et al.
Publicado: (2018)

Yeast Prp2 liberates the 5′ splice site and the branch site adenosine for catalysis of pre-mRNA splicing
por: Bao, Penghui, et al.
Publicado: (2017)

MicroRNA-Biogenesis and Pre-mRNA Splicing Crosstalk
por: Shomron, Noam, et al.
Publicado: (2009)

DiffSplice: the genome-wide detection of differential splicing events with RNA-seq
por: Hu, Yin, et al.
Publicado: (2013)

TCGASpliceSeq a compendium of alternative mRNA splicing in cancer
por: Ryan, Michael, et al.
Publicado: (2016)

Cotranscriptional recruitment of yeast TRAMP complex to intronic sequences promotes optimal pre-mRNA splicing
por: Kong, Ka-Yiu Edwin, et al.
Publicado: (2014)

Pre-mRNA splicing-associated diseases and therapies
por: Love, Sierra L., et al.
Publicado: (2023)

Prediction of alternative pre-mRNA splicing outcomes
por: Najjar, Rayan, et al.
Publicado: (2023)

RASflow: an RNA-Seq analysis workflow with Snakemake
por: Zhang, Xiaokang, et al.
Publicado: (2020)

Genome-wide analysis of alternative splicing of pre-mRNA under salt stress in Arabidopsis
por: Ding, Feng, et al.
Publicado: (2014)

Fungal CSL transcription factors
por: Převorovský, Martin, et al.
Publicado: (2007)

TRAP150 activates pre-mRNA splicing and promotes nuclear mRNA degradation
por: Lee, Kuo-Ming, et al.
Publicado: (2010)

Secondary structure is required for 3′ splice site recognition in yeast
por: Gahura, Ondřej, et al.
Publicado: (2011)

Disruption of pre-mRNA splicing in vivo results in reorganization of splicing factors
Publicado: (1994)

Genome-wide prediction of cis-acting RNA elements regulating tissue-specific pre-mRNA alternative splicing
por: Wang, Xin, et al.
Publicado: (2009)

Molecular dissection of step 2 catalysis of yeast pre-mRNA splicing investigated in a purified system
por: Ohrt, Thomas, et al.
Publicado: (2013)

N-Termini of Fungal CSL Transcription Factors Are Disordered, Enriched in Regulatory Motifs and Inhibit DNA Binding in Fission Yeast
por: Převorovský, Martin, et al.
Publicado: (2011)

Pre-mRNA Splicing in Plants: In Vivo Functions of RNA-Binding Proteins Implicated in the Splicing Process
por: Meyer, Katja, et al.
Publicado: (2015)

Regulation of glutamate receptor B pre-mRNA splicing by RNA editing
por: Schoft, Vera K., et al.
Publicado: (2007)

Pre-mRNA Processing Factors and Retinitis Pigmentosa: RNA Splicing and Beyond
por: Yang, Chunbo, et al.
Publicado: (2021)

Pre-mRNA Splicing Is a Determinant of Nucleosome Organization
por: Keren-Shaul, Hadas, et al.
Publicado: (2013)

Identification of Small Molecule Inhibitors of Pre-mRNA Splicing
por: Pawellek, Andrea, et al.
Publicado: (2014)

Quantification of pre-mRNA escape rate and synergy in splicing
por: Bonde, Marie Mi, et al.
Publicado: (2014)

Pre-mRNA splicing is a determinant of nucleosome organization
por: Keren-Shaul, Hadas, et al.
Publicado: (2013)

The Function of Pre-mRNA Alternative Splicing in Mammal Spermatogenesis
por: Song, Huibin, et al.
Publicado: (2020)

Alternative Splicing of Pre-mRNA in the Control of Immune Activity
por: Su, Zhongjing, et al.
Publicado: (2021)

The problem of selection bias in studies of pre-mRNA splicing
por: Dwyer, Zachary W., et al.
Publicado: (2023)

The role of alternative pre-mRNA splicing in cancer progression
por: Choi, Sunkyung, et al.
Publicado: (2023)

Trans-splicing of pre-mRNA is predicted to occur in a wide range of organisms including vertebrates.
por: Dandekar, T, et al.
Publicado: (1990)

Spliceosome-Mediated Pre-mRNA trans-Splicing Can Repair CEP290 mRNA
por: Dooley, Scott J., et al.
Publicado: (2018)

pyrpipe: a Python package for RNA-Seq workflows
por: Singh, Urminder, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_fb5q6cif5dsh32b636dgh9n80s