Cargando…
Rapid dissemination of taxonomic discoveries based on DNA barcoding and morphology
The taxonomic impediment is characterized by dwindling classical taxonomic expertise, and slow pace of revisionary work, thus more rapid taxonomic assessments are needed. Here we pair rapid DNA barcoding methods with swift assessment of morphology in an effort to gauge diversity, establish species l...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5171852/ https://www.ncbi.nlm.nih.gov/pubmed/27991489 http://dx.doi.org/10.1038/srep37066 |
_version_ | 1782484025767624704 |
---|---|
author | Cao, Xiaowei Liu, Jie Chen, Jian Zheng, Guo Kuntner, Matjaž Agnarsson, Ingi |
author_facet | Cao, Xiaowei Liu, Jie Chen, Jian Zheng, Guo Kuntner, Matjaž Agnarsson, Ingi |
author_sort | Cao, Xiaowei |
collection | PubMed |
description | The taxonomic impediment is characterized by dwindling classical taxonomic expertise, and slow pace of revisionary work, thus more rapid taxonomic assessments are needed. Here we pair rapid DNA barcoding methods with swift assessment of morphology in an effort to gauge diversity, establish species limits, and rapidly disseminate taxonomic information prior to completion of formal taxonomic revisions. We focus on a poorly studied, but diverse spider genus, Pseudopoda, from East Asia. We augmented the standard barcoding locus (COI) with nuclear DNA sequence data (ITS2) and analyzed congruence among datasets and species delimitation methods for a total of 572 individuals representing 23 described species and many potentially new species. Our results suggest that a combination of CO1 + ITS2 fragments identify and diagnose species better than the mitochondrial barcodes alone, and that certain tree based methods yield considerably higher diversity estimates than the distance-based approaches and morphology. Combined, through an extensive field survey, we detect a twofold increase in species diversity in the surveyed area, at 42–45, with most species representing short range endemics. Our study demonstrates the power of biodiversity assessments and swift dissemination of taxonomic data through rapid inventory, and through a combination of morphological and multi-locus DNA barcoding diagnoses of diverse arthropod lineages. |
format | Online Article Text |
id | pubmed-5171852 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-51718522016-12-28 Rapid dissemination of taxonomic discoveries based on DNA barcoding and morphology Cao, Xiaowei Liu, Jie Chen, Jian Zheng, Guo Kuntner, Matjaž Agnarsson, Ingi Sci Rep Article The taxonomic impediment is characterized by dwindling classical taxonomic expertise, and slow pace of revisionary work, thus more rapid taxonomic assessments are needed. Here we pair rapid DNA barcoding methods with swift assessment of morphology in an effort to gauge diversity, establish species limits, and rapidly disseminate taxonomic information prior to completion of formal taxonomic revisions. We focus on a poorly studied, but diverse spider genus, Pseudopoda, from East Asia. We augmented the standard barcoding locus (COI) with nuclear DNA sequence data (ITS2) and analyzed congruence among datasets and species delimitation methods for a total of 572 individuals representing 23 described species and many potentially new species. Our results suggest that a combination of CO1 + ITS2 fragments identify and diagnose species better than the mitochondrial barcodes alone, and that certain tree based methods yield considerably higher diversity estimates than the distance-based approaches and morphology. Combined, through an extensive field survey, we detect a twofold increase in species diversity in the surveyed area, at 42–45, with most species representing short range endemics. Our study demonstrates the power of biodiversity assessments and swift dissemination of taxonomic data through rapid inventory, and through a combination of morphological and multi-locus DNA barcoding diagnoses of diverse arthropod lineages. Nature Publishing Group 2016-12-19 /pmc/articles/PMC5171852/ /pubmed/27991489 http://dx.doi.org/10.1038/srep37066 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Cao, Xiaowei Liu, Jie Chen, Jian Zheng, Guo Kuntner, Matjaž Agnarsson, Ingi Rapid dissemination of taxonomic discoveries based on DNA barcoding and morphology |
title | Rapid dissemination of taxonomic discoveries based on DNA barcoding and morphology |
title_full | Rapid dissemination of taxonomic discoveries based on DNA barcoding and morphology |
title_fullStr | Rapid dissemination of taxonomic discoveries based on DNA barcoding and morphology |
title_full_unstemmed | Rapid dissemination of taxonomic discoveries based on DNA barcoding and morphology |
title_short | Rapid dissemination of taxonomic discoveries based on DNA barcoding and morphology |
title_sort | rapid dissemination of taxonomic discoveries based on dna barcoding and morphology |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5171852/ https://www.ncbi.nlm.nih.gov/pubmed/27991489 http://dx.doi.org/10.1038/srep37066 |
work_keys_str_mv | AT caoxiaowei rapiddisseminationoftaxonomicdiscoveriesbasedondnabarcodingandmorphology AT liujie rapiddisseminationoftaxonomicdiscoveriesbasedondnabarcodingandmorphology AT chenjian rapiddisseminationoftaxonomicdiscoveriesbasedondnabarcodingandmorphology AT zhengguo rapiddisseminationoftaxonomicdiscoveriesbasedondnabarcodingandmorphology AT kuntnermatjaz rapiddisseminationoftaxonomicdiscoveriesbasedondnabarcodingandmorphology AT agnarssoningi rapiddisseminationoftaxonomicdiscoveriesbasedondnabarcodingandmorphology |