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A Genome Sequence of Novel SARS-CoV Isolates: the Genotype, GD-Ins29, Leads to a Hypothesis of Viral Transmission in South China

We report a complete genomic sequence of rare isolates (minor genotype) of the SARS-CoV from SARS patients in Guangdong, China, where the first few cases emerged. The most striking discovery from the isolate is an extra 29-nucleotide sequence located at the nucleotide positions between 27,863 and 27...

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Autores principales: Qin, E’de, He, Xionglei, Tian, Wei, Liu, Yong, Li, Wei, Wen, Jie, Wang, Jingqiang, Fan, Baochang, Wu, Qingfa, Chang, Guohui, Cao, Wuchun, Xu, Zuyuan, Yang, Ruifu, Wang, Jing, Yu, Man, Li, Yan, Xu, Jing, Si, Bingyin, Hu, Yongwu, Peng, Wenming, Tang, Lin, Jiang, Tao, Shi, Jianping, Ji, Jia, Zhang, Yu, Ye, Jia, Wang, Cui’e, Han, Yujun, Zhou, Jun, Deng, Yajun, Li, Xiaoyu, Hu, Jianfei, Wang, Caiping, Yan, Chunxia, Zhang, Qingrun, Bao, Jingyue, Li, Guoqing, Chen, Weijun, Fang, Lin, Li, Changfeng, Lei, Meng, Li, Dawei, Tong, Wei, Tian, Xiangjun, Wang, Jin, Zhang, Bo, Zhang, Haiqing, Zhang, Yilin, Zhao, Hui, Zhang, Xiaowei, Li, Shuangli, Cheng, Xiaojie, Zhang, Xiuqing, Liu, Bin, Zeng, Changqing, Li, Songgang, Tan, Xuehai, Liu, Siqi, Dong, Wei, Wang, Jun, Wong, Gane Ka-Shu, Yu, Jun, Wang, Jian, Zhu, Qingyu, Yang, Huanming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2003
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5172408/
https://www.ncbi.nlm.nih.gov/pubmed/15626340
http://dx.doi.org/10.1016/S1672-0229(03)01014-3
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author Qin, E’de
He, Xionglei
Tian, Wei
Liu, Yong
Li, Wei
Wen, Jie
Wang, Jingqiang
Fan, Baochang
Wu, Qingfa
Chang, Guohui
Cao, Wuchun
Xu, Zuyuan
Yang, Ruifu
Wang, Jing
Yu, Man
Li, Yan
Xu, Jing
Si, Bingyin
Hu, Yongwu
Peng, Wenming
Tang, Lin
Jiang, Tao
Shi, Jianping
Ji, Jia
Zhang, Yu
Ye, Jia
Wang, Cui’e
Han, Yujun
Zhou, Jun
Deng, Yajun
Li, Xiaoyu
Hu, Jianfei
Wang, Caiping
Yan, Chunxia
Zhang, Qingrun
Bao, Jingyue
Li, Guoqing
Chen, Weijun
Fang, Lin
Li, Changfeng
Lei, Meng
Li, Dawei
Tong, Wei
Tian, Xiangjun
Wang, Jin
Zhang, Bo
Zhang, Haiqing
Zhang, Yilin
Zhao, Hui
Zhang, Xiaowei
Li, Shuangli
Cheng, Xiaojie
Zhang, Xiuqing
Liu, Bin
Zeng, Changqing
Li, Songgang
Tan, Xuehai
Liu, Siqi
Dong, Wei
Wang, Jun
Wong, Gane Ka-Shu
Yu, Jun
Wang, Jian
Zhu, Qingyu
Yang, Huanming
author_facet Qin, E’de
He, Xionglei
Tian, Wei
Liu, Yong
Li, Wei
Wen, Jie
Wang, Jingqiang
Fan, Baochang
Wu, Qingfa
Chang, Guohui
Cao, Wuchun
Xu, Zuyuan
Yang, Ruifu
Wang, Jing
Yu, Man
Li, Yan
Xu, Jing
Si, Bingyin
Hu, Yongwu
Peng, Wenming
Tang, Lin
Jiang, Tao
Shi, Jianping
Ji, Jia
Zhang, Yu
Ye, Jia
Wang, Cui’e
Han, Yujun
Zhou, Jun
Deng, Yajun
Li, Xiaoyu
Hu, Jianfei
Wang, Caiping
Yan, Chunxia
Zhang, Qingrun
Bao, Jingyue
Li, Guoqing
Chen, Weijun
Fang, Lin
Li, Changfeng
Lei, Meng
Li, Dawei
Tong, Wei
Tian, Xiangjun
Wang, Jin
Zhang, Bo
Zhang, Haiqing
Zhang, Yilin
Zhao, Hui
Zhang, Xiaowei
Li, Shuangli
Cheng, Xiaojie
Zhang, Xiuqing
Liu, Bin
Zeng, Changqing
Li, Songgang
Tan, Xuehai
Liu, Siqi
Dong, Wei
Wang, Jun
Wong, Gane Ka-Shu
Yu, Jun
Wang, Jian
Zhu, Qingyu
Yang, Huanming
author_sort Qin, E’de
collection PubMed
description We report a complete genomic sequence of rare isolates (minor genotype) of the SARS-CoV from SARS patients in Guangdong, China, where the first few cases emerged. The most striking discovery from the isolate is an extra 29-nucleotide sequence located at the nucleotide positions between 27,863 and 27,864 (referred to the complete sequence of BJ01) within an overlapped region composed of BGI-PUP5 (BGI-postulated uncharacterized protein 5) and BGI-PUP6 upstream of the N (nucleocapsid) protein. The discovery of this minor genotype, GD-Ins29, suggests a significant genetic event and differentiates it from the previously reported genotype, the dominant form among all sequenced SARS-CoV isolates. A 17-nt segment of this extra sequence is identical to a segment of the same size in two human mRNA sequences that may interfere with viral genome replication and transcription in the cytosol of the infected cells. It provides a new avenue for the exploration of the virus-host interaction in viral evolution, host pathogenesis, and vaccine development.
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spelling pubmed-51724082016-12-23 A Genome Sequence of Novel SARS-CoV Isolates: the Genotype, GD-Ins29, Leads to a Hypothesis of Viral Transmission in South China Qin, E’de He, Xionglei Tian, Wei Liu, Yong Li, Wei Wen, Jie Wang, Jingqiang Fan, Baochang Wu, Qingfa Chang, Guohui Cao, Wuchun Xu, Zuyuan Yang, Ruifu Wang, Jing Yu, Man Li, Yan Xu, Jing Si, Bingyin Hu, Yongwu Peng, Wenming Tang, Lin Jiang, Tao Shi, Jianping Ji, Jia Zhang, Yu Ye, Jia Wang, Cui’e Han, Yujun Zhou, Jun Deng, Yajun Li, Xiaoyu Hu, Jianfei Wang, Caiping Yan, Chunxia Zhang, Qingrun Bao, Jingyue Li, Guoqing Chen, Weijun Fang, Lin Li, Changfeng Lei, Meng Li, Dawei Tong, Wei Tian, Xiangjun Wang, Jin Zhang, Bo Zhang, Haiqing Zhang, Yilin Zhao, Hui Zhang, Xiaowei Li, Shuangli Cheng, Xiaojie Zhang, Xiuqing Liu, Bin Zeng, Changqing Li, Songgang Tan, Xuehai Liu, Siqi Dong, Wei Wang, Jun Wong, Gane Ka-Shu Yu, Jun Wang, Jian Zhu, Qingyu Yang, Huanming Genomics Proteomics Bioinformatics Article We report a complete genomic sequence of rare isolates (minor genotype) of the SARS-CoV from SARS patients in Guangdong, China, where the first few cases emerged. The most striking discovery from the isolate is an extra 29-nucleotide sequence located at the nucleotide positions between 27,863 and 27,864 (referred to the complete sequence of BJ01) within an overlapped region composed of BGI-PUP5 (BGI-postulated uncharacterized protein 5) and BGI-PUP6 upstream of the N (nucleocapsid) protein. The discovery of this minor genotype, GD-Ins29, suggests a significant genetic event and differentiates it from the previously reported genotype, the dominant form among all sequenced SARS-CoV isolates. A 17-nt segment of this extra sequence is identical to a segment of the same size in two human mRNA sequences that may interfere with viral genome replication and transcription in the cytosol of the infected cells. It provides a new avenue for the exploration of the virus-host interaction in viral evolution, host pathogenesis, and vaccine development. Elsevier 2003-05 2016-11-28 /pmc/articles/PMC5172408/ /pubmed/15626340 http://dx.doi.org/10.1016/S1672-0229(03)01014-3 Text en . http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Qin, E’de
He, Xionglei
Tian, Wei
Liu, Yong
Li, Wei
Wen, Jie
Wang, Jingqiang
Fan, Baochang
Wu, Qingfa
Chang, Guohui
Cao, Wuchun
Xu, Zuyuan
Yang, Ruifu
Wang, Jing
Yu, Man
Li, Yan
Xu, Jing
Si, Bingyin
Hu, Yongwu
Peng, Wenming
Tang, Lin
Jiang, Tao
Shi, Jianping
Ji, Jia
Zhang, Yu
Ye, Jia
Wang, Cui’e
Han, Yujun
Zhou, Jun
Deng, Yajun
Li, Xiaoyu
Hu, Jianfei
Wang, Caiping
Yan, Chunxia
Zhang, Qingrun
Bao, Jingyue
Li, Guoqing
Chen, Weijun
Fang, Lin
Li, Changfeng
Lei, Meng
Li, Dawei
Tong, Wei
Tian, Xiangjun
Wang, Jin
Zhang, Bo
Zhang, Haiqing
Zhang, Yilin
Zhao, Hui
Zhang, Xiaowei
Li, Shuangli
Cheng, Xiaojie
Zhang, Xiuqing
Liu, Bin
Zeng, Changqing
Li, Songgang
Tan, Xuehai
Liu, Siqi
Dong, Wei
Wang, Jun
Wong, Gane Ka-Shu
Yu, Jun
Wang, Jian
Zhu, Qingyu
Yang, Huanming
A Genome Sequence of Novel SARS-CoV Isolates: the Genotype, GD-Ins29, Leads to a Hypothesis of Viral Transmission in South China
title A Genome Sequence of Novel SARS-CoV Isolates: the Genotype, GD-Ins29, Leads to a Hypothesis of Viral Transmission in South China
title_full A Genome Sequence of Novel SARS-CoV Isolates: the Genotype, GD-Ins29, Leads to a Hypothesis of Viral Transmission in South China
title_fullStr A Genome Sequence of Novel SARS-CoV Isolates: the Genotype, GD-Ins29, Leads to a Hypothesis of Viral Transmission in South China
title_full_unstemmed A Genome Sequence of Novel SARS-CoV Isolates: the Genotype, GD-Ins29, Leads to a Hypothesis of Viral Transmission in South China
title_short A Genome Sequence of Novel SARS-CoV Isolates: the Genotype, GD-Ins29, Leads to a Hypothesis of Viral Transmission in South China
title_sort genome sequence of novel sars-cov isolates: the genotype, gd-ins29, leads to a hypothesis of viral transmission in south china
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5172408/
https://www.ncbi.nlm.nih.gov/pubmed/15626340
http://dx.doi.org/10.1016/S1672-0229(03)01014-3
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AT tanxuehai genomesequenceofnovelsarscovisolatesthegenotypegdins29leadstoahypothesisofviraltransmissioninsouthchina
AT liusiqi genomesequenceofnovelsarscovisolatesthegenotypegdins29leadstoahypothesisofviraltransmissioninsouthchina
AT dongwei genomesequenceofnovelsarscovisolatesthegenotypegdins29leadstoahypothesisofviraltransmissioninsouthchina
AT wangjun genomesequenceofnovelsarscovisolatesthegenotypegdins29leadstoahypothesisofviraltransmissioninsouthchina
AT wongganekashu genomesequenceofnovelsarscovisolatesthegenotypegdins29leadstoahypothesisofviraltransmissioninsouthchina
AT yujun genomesequenceofnovelsarscovisolatesthegenotypegdins29leadstoahypothesisofviraltransmissioninsouthchina
AT wangjian genomesequenceofnovelsarscovisolatesthegenotypegdins29leadstoahypothesisofviraltransmissioninsouthchina
AT zhuqingyu genomesequenceofnovelsarscovisolatesthegenotypegdins29leadstoahypothesisofviraltransmissioninsouthchina
AT yanghuanming genomesequenceofnovelsarscovisolatesthegenotypegdins29leadstoahypothesisofviraltransmissioninsouthchina