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A Genome Sequence of Novel SARS-CoV Isolates: the Genotype, GD-Ins29, Leads to a Hypothesis of Viral Transmission in South China
We report a complete genomic sequence of rare isolates (minor genotype) of the SARS-CoV from SARS patients in Guangdong, China, where the first few cases emerged. The most striking discovery from the isolate is an extra 29-nucleotide sequence located at the nucleotide positions between 27,863 and 27...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2003
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5172408/ https://www.ncbi.nlm.nih.gov/pubmed/15626340 http://dx.doi.org/10.1016/S1672-0229(03)01014-3 |
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author | Qin, E’de He, Xionglei Tian, Wei Liu, Yong Li, Wei Wen, Jie Wang, Jingqiang Fan, Baochang Wu, Qingfa Chang, Guohui Cao, Wuchun Xu, Zuyuan Yang, Ruifu Wang, Jing Yu, Man Li, Yan Xu, Jing Si, Bingyin Hu, Yongwu Peng, Wenming Tang, Lin Jiang, Tao Shi, Jianping Ji, Jia Zhang, Yu Ye, Jia Wang, Cui’e Han, Yujun Zhou, Jun Deng, Yajun Li, Xiaoyu Hu, Jianfei Wang, Caiping Yan, Chunxia Zhang, Qingrun Bao, Jingyue Li, Guoqing Chen, Weijun Fang, Lin Li, Changfeng Lei, Meng Li, Dawei Tong, Wei Tian, Xiangjun Wang, Jin Zhang, Bo Zhang, Haiqing Zhang, Yilin Zhao, Hui Zhang, Xiaowei Li, Shuangli Cheng, Xiaojie Zhang, Xiuqing Liu, Bin Zeng, Changqing Li, Songgang Tan, Xuehai Liu, Siqi Dong, Wei Wang, Jun Wong, Gane Ka-Shu Yu, Jun Wang, Jian Zhu, Qingyu Yang, Huanming |
author_facet | Qin, E’de He, Xionglei Tian, Wei Liu, Yong Li, Wei Wen, Jie Wang, Jingqiang Fan, Baochang Wu, Qingfa Chang, Guohui Cao, Wuchun Xu, Zuyuan Yang, Ruifu Wang, Jing Yu, Man Li, Yan Xu, Jing Si, Bingyin Hu, Yongwu Peng, Wenming Tang, Lin Jiang, Tao Shi, Jianping Ji, Jia Zhang, Yu Ye, Jia Wang, Cui’e Han, Yujun Zhou, Jun Deng, Yajun Li, Xiaoyu Hu, Jianfei Wang, Caiping Yan, Chunxia Zhang, Qingrun Bao, Jingyue Li, Guoqing Chen, Weijun Fang, Lin Li, Changfeng Lei, Meng Li, Dawei Tong, Wei Tian, Xiangjun Wang, Jin Zhang, Bo Zhang, Haiqing Zhang, Yilin Zhao, Hui Zhang, Xiaowei Li, Shuangli Cheng, Xiaojie Zhang, Xiuqing Liu, Bin Zeng, Changqing Li, Songgang Tan, Xuehai Liu, Siqi Dong, Wei Wang, Jun Wong, Gane Ka-Shu Yu, Jun Wang, Jian Zhu, Qingyu Yang, Huanming |
author_sort | Qin, E’de |
collection | PubMed |
description | We report a complete genomic sequence of rare isolates (minor genotype) of the SARS-CoV from SARS patients in Guangdong, China, where the first few cases emerged. The most striking discovery from the isolate is an extra 29-nucleotide sequence located at the nucleotide positions between 27,863 and 27,864 (referred to the complete sequence of BJ01) within an overlapped region composed of BGI-PUP5 (BGI-postulated uncharacterized protein 5) and BGI-PUP6 upstream of the N (nucleocapsid) protein. The discovery of this minor genotype, GD-Ins29, suggests a significant genetic event and differentiates it from the previously reported genotype, the dominant form among all sequenced SARS-CoV isolates. A 17-nt segment of this extra sequence is identical to a segment of the same size in two human mRNA sequences that may interfere with viral genome replication and transcription in the cytosol of the infected cells. It provides a new avenue for the exploration of the virus-host interaction in viral evolution, host pathogenesis, and vaccine development. |
format | Online Article Text |
id | pubmed-5172408 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2003 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-51724082016-12-23 A Genome Sequence of Novel SARS-CoV Isolates: the Genotype, GD-Ins29, Leads to a Hypothesis of Viral Transmission in South China Qin, E’de He, Xionglei Tian, Wei Liu, Yong Li, Wei Wen, Jie Wang, Jingqiang Fan, Baochang Wu, Qingfa Chang, Guohui Cao, Wuchun Xu, Zuyuan Yang, Ruifu Wang, Jing Yu, Man Li, Yan Xu, Jing Si, Bingyin Hu, Yongwu Peng, Wenming Tang, Lin Jiang, Tao Shi, Jianping Ji, Jia Zhang, Yu Ye, Jia Wang, Cui’e Han, Yujun Zhou, Jun Deng, Yajun Li, Xiaoyu Hu, Jianfei Wang, Caiping Yan, Chunxia Zhang, Qingrun Bao, Jingyue Li, Guoqing Chen, Weijun Fang, Lin Li, Changfeng Lei, Meng Li, Dawei Tong, Wei Tian, Xiangjun Wang, Jin Zhang, Bo Zhang, Haiqing Zhang, Yilin Zhao, Hui Zhang, Xiaowei Li, Shuangli Cheng, Xiaojie Zhang, Xiuqing Liu, Bin Zeng, Changqing Li, Songgang Tan, Xuehai Liu, Siqi Dong, Wei Wang, Jun Wong, Gane Ka-Shu Yu, Jun Wang, Jian Zhu, Qingyu Yang, Huanming Genomics Proteomics Bioinformatics Article We report a complete genomic sequence of rare isolates (minor genotype) of the SARS-CoV from SARS patients in Guangdong, China, where the first few cases emerged. The most striking discovery from the isolate is an extra 29-nucleotide sequence located at the nucleotide positions between 27,863 and 27,864 (referred to the complete sequence of BJ01) within an overlapped region composed of BGI-PUP5 (BGI-postulated uncharacterized protein 5) and BGI-PUP6 upstream of the N (nucleocapsid) protein. The discovery of this minor genotype, GD-Ins29, suggests a significant genetic event and differentiates it from the previously reported genotype, the dominant form among all sequenced SARS-CoV isolates. A 17-nt segment of this extra sequence is identical to a segment of the same size in two human mRNA sequences that may interfere with viral genome replication and transcription in the cytosol of the infected cells. It provides a new avenue for the exploration of the virus-host interaction in viral evolution, host pathogenesis, and vaccine development. Elsevier 2003-05 2016-11-28 /pmc/articles/PMC5172408/ /pubmed/15626340 http://dx.doi.org/10.1016/S1672-0229(03)01014-3 Text en . http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Qin, E’de He, Xionglei Tian, Wei Liu, Yong Li, Wei Wen, Jie Wang, Jingqiang Fan, Baochang Wu, Qingfa Chang, Guohui Cao, Wuchun Xu, Zuyuan Yang, Ruifu Wang, Jing Yu, Man Li, Yan Xu, Jing Si, Bingyin Hu, Yongwu Peng, Wenming Tang, Lin Jiang, Tao Shi, Jianping Ji, Jia Zhang, Yu Ye, Jia Wang, Cui’e Han, Yujun Zhou, Jun Deng, Yajun Li, Xiaoyu Hu, Jianfei Wang, Caiping Yan, Chunxia Zhang, Qingrun Bao, Jingyue Li, Guoqing Chen, Weijun Fang, Lin Li, Changfeng Lei, Meng Li, Dawei Tong, Wei Tian, Xiangjun Wang, Jin Zhang, Bo Zhang, Haiqing Zhang, Yilin Zhao, Hui Zhang, Xiaowei Li, Shuangli Cheng, Xiaojie Zhang, Xiuqing Liu, Bin Zeng, Changqing Li, Songgang Tan, Xuehai Liu, Siqi Dong, Wei Wang, Jun Wong, Gane Ka-Shu Yu, Jun Wang, Jian Zhu, Qingyu Yang, Huanming A Genome Sequence of Novel SARS-CoV Isolates: the Genotype, GD-Ins29, Leads to a Hypothesis of Viral Transmission in South China |
title | A Genome Sequence of Novel SARS-CoV Isolates: the Genotype, GD-Ins29, Leads to a Hypothesis of Viral Transmission in South China |
title_full | A Genome Sequence of Novel SARS-CoV Isolates: the Genotype, GD-Ins29, Leads to a Hypothesis of Viral Transmission in South China |
title_fullStr | A Genome Sequence of Novel SARS-CoV Isolates: the Genotype, GD-Ins29, Leads to a Hypothesis of Viral Transmission in South China |
title_full_unstemmed | A Genome Sequence of Novel SARS-CoV Isolates: the Genotype, GD-Ins29, Leads to a Hypothesis of Viral Transmission in South China |
title_short | A Genome Sequence of Novel SARS-CoV Isolates: the Genotype, GD-Ins29, Leads to a Hypothesis of Viral Transmission in South China |
title_sort | genome sequence of novel sars-cov isolates: the genotype, gd-ins29, leads to a hypothesis of viral transmission in south china |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5172408/ https://www.ncbi.nlm.nih.gov/pubmed/15626340 http://dx.doi.org/10.1016/S1672-0229(03)01014-3 |
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