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Complete Genome Sequences of the SARS-CoV: the BJ Group (Isolates BJ01-BJ04)
Beijing has been one of the epicenters attacked most severely by the SARS-CoV (severe acute respiratory syndrome-associated coronavirus) since the first patient was diagnosed in one of the city’s hospitals. We now report complete genome sequences of the BJ Group, including four isolates (Isolates BJ...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2003
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5172409/ https://www.ncbi.nlm.nih.gov/pubmed/15629030 http://dx.doi.org/10.1016/S1672-0229(03)01023-4 |
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author | Bi, Shengli Qin, E’de Xu, Zuyuan Li, Wei Wang, Jing Hu, Yongwu Liu, Yong Duan, Shumin Hu, Jianfei Han, Yujun Xu, Jing Li, Yan Yi, Yao Zhou, Yongdong Lin, Wei Wen, Jie Xu, Hong Li, Ruan Zhang, Zizhang Sun, Haiyan Zhu, Jingui Yu, Man Fan, Baochang Wu, Qingfa Lin, Wei Tang, Lin Yang, Bao’an Li, Guoqing Peng, Wenming Li, Wenjie Jiang, Tao Deng, Yajun Liu, Bohua Shi, Jianping Deng, Yongqiang Wei, Wei Liu, Hong Tong, Zongzhong Zhang, Feng Zhang, Yu Wang, Cui’e Li, Yuquan Ye, Jia Gan, Yonghua Ji, Jia Li, Xiaoyu Tian, Xiangjun Lu, Fushuang Tan, Gang Yang, Ruifu Liu, Bin Liu, Siqi Li, Songgang Wang, Jun Wang, Jian Cao, Wuchun Yu, Jun Dong, Xiaoping Yang, Huanming |
author_facet | Bi, Shengli Qin, E’de Xu, Zuyuan Li, Wei Wang, Jing Hu, Yongwu Liu, Yong Duan, Shumin Hu, Jianfei Han, Yujun Xu, Jing Li, Yan Yi, Yao Zhou, Yongdong Lin, Wei Wen, Jie Xu, Hong Li, Ruan Zhang, Zizhang Sun, Haiyan Zhu, Jingui Yu, Man Fan, Baochang Wu, Qingfa Lin, Wei Tang, Lin Yang, Bao’an Li, Guoqing Peng, Wenming Li, Wenjie Jiang, Tao Deng, Yajun Liu, Bohua Shi, Jianping Deng, Yongqiang Wei, Wei Liu, Hong Tong, Zongzhong Zhang, Feng Zhang, Yu Wang, Cui’e Li, Yuquan Ye, Jia Gan, Yonghua Ji, Jia Li, Xiaoyu Tian, Xiangjun Lu, Fushuang Tan, Gang Yang, Ruifu Liu, Bin Liu, Siqi Li, Songgang Wang, Jun Wang, Jian Cao, Wuchun Yu, Jun Dong, Xiaoping Yang, Huanming |
author_sort | Bi, Shengli |
collection | PubMed |
description | Beijing has been one of the epicenters attacked most severely by the SARS-CoV (severe acute respiratory syndrome-associated coronavirus) since the first patient was diagnosed in one of the city’s hospitals. We now report complete genome sequences of the BJ Group, including four isolates (Isolates BJ01, BJ02, BJ03, and BJ04) of the SARS-CoV. It is remarkable that all members of the BJ Group share a common haplotype, consisting of seven loci that differentiate the group from other isolates published to date. Among 42 substitutions uniquely identified from the BJ group, 32 are non-synonymous changes at the amino acid level. Rooted phylogenetic trees, proposed on the basis of haplotypes and other sequence variations of SARS-CoV isolates from Canada, USA, Singapore, and China, gave rise to different paradigms but positioned the BJ Group, together with the newly discovered GD01 (GD-Ins29) in the same clade, followed by the H-U Group (from Hong Kong to USA) and the H-T Group (from Hong Kong to Toronto), leaving the SP Group (Singapore) more distant. This result appears to suggest a possible transmission path from Guangdong to Beijing/Hong Kong, then to other countries and regions. |
format | Online Article Text |
id | pubmed-5172409 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2003 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-51724092016-12-23 Complete Genome Sequences of the SARS-CoV: the BJ Group (Isolates BJ01-BJ04) Bi, Shengli Qin, E’de Xu, Zuyuan Li, Wei Wang, Jing Hu, Yongwu Liu, Yong Duan, Shumin Hu, Jianfei Han, Yujun Xu, Jing Li, Yan Yi, Yao Zhou, Yongdong Lin, Wei Wen, Jie Xu, Hong Li, Ruan Zhang, Zizhang Sun, Haiyan Zhu, Jingui Yu, Man Fan, Baochang Wu, Qingfa Lin, Wei Tang, Lin Yang, Bao’an Li, Guoqing Peng, Wenming Li, Wenjie Jiang, Tao Deng, Yajun Liu, Bohua Shi, Jianping Deng, Yongqiang Wei, Wei Liu, Hong Tong, Zongzhong Zhang, Feng Zhang, Yu Wang, Cui’e Li, Yuquan Ye, Jia Gan, Yonghua Ji, Jia Li, Xiaoyu Tian, Xiangjun Lu, Fushuang Tan, Gang Yang, Ruifu Liu, Bin Liu, Siqi Li, Songgang Wang, Jun Wang, Jian Cao, Wuchun Yu, Jun Dong, Xiaoping Yang, Huanming Genomics Proteomics Bioinformatics Article Beijing has been one of the epicenters attacked most severely by the SARS-CoV (severe acute respiratory syndrome-associated coronavirus) since the first patient was diagnosed in one of the city’s hospitals. We now report complete genome sequences of the BJ Group, including four isolates (Isolates BJ01, BJ02, BJ03, and BJ04) of the SARS-CoV. It is remarkable that all members of the BJ Group share a common haplotype, consisting of seven loci that differentiate the group from other isolates published to date. Among 42 substitutions uniquely identified from the BJ group, 32 are non-synonymous changes at the amino acid level. Rooted phylogenetic trees, proposed on the basis of haplotypes and other sequence variations of SARS-CoV isolates from Canada, USA, Singapore, and China, gave rise to different paradigms but positioned the BJ Group, together with the newly discovered GD01 (GD-Ins29) in the same clade, followed by the H-U Group (from Hong Kong to USA) and the H-T Group (from Hong Kong to Toronto), leaving the SP Group (Singapore) more distant. This result appears to suggest a possible transmission path from Guangdong to Beijing/Hong Kong, then to other countries and regions. Elsevier 2003-08 2016-11-28 /pmc/articles/PMC5172409/ /pubmed/15629030 http://dx.doi.org/10.1016/S1672-0229(03)01023-4 Text en . http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Bi, Shengli Qin, E’de Xu, Zuyuan Li, Wei Wang, Jing Hu, Yongwu Liu, Yong Duan, Shumin Hu, Jianfei Han, Yujun Xu, Jing Li, Yan Yi, Yao Zhou, Yongdong Lin, Wei Wen, Jie Xu, Hong Li, Ruan Zhang, Zizhang Sun, Haiyan Zhu, Jingui Yu, Man Fan, Baochang Wu, Qingfa Lin, Wei Tang, Lin Yang, Bao’an Li, Guoqing Peng, Wenming Li, Wenjie Jiang, Tao Deng, Yajun Liu, Bohua Shi, Jianping Deng, Yongqiang Wei, Wei Liu, Hong Tong, Zongzhong Zhang, Feng Zhang, Yu Wang, Cui’e Li, Yuquan Ye, Jia Gan, Yonghua Ji, Jia Li, Xiaoyu Tian, Xiangjun Lu, Fushuang Tan, Gang Yang, Ruifu Liu, Bin Liu, Siqi Li, Songgang Wang, Jun Wang, Jian Cao, Wuchun Yu, Jun Dong, Xiaoping Yang, Huanming Complete Genome Sequences of the SARS-CoV: the BJ Group (Isolates BJ01-BJ04) |
title | Complete Genome Sequences of the SARS-CoV: the BJ Group (Isolates BJ01-BJ04) |
title_full | Complete Genome Sequences of the SARS-CoV: the BJ Group (Isolates BJ01-BJ04) |
title_fullStr | Complete Genome Sequences of the SARS-CoV: the BJ Group (Isolates BJ01-BJ04) |
title_full_unstemmed | Complete Genome Sequences of the SARS-CoV: the BJ Group (Isolates BJ01-BJ04) |
title_short | Complete Genome Sequences of the SARS-CoV: the BJ Group (Isolates BJ01-BJ04) |
title_sort | complete genome sequences of the sars-cov: the bj group (isolates bj01-bj04) |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5172409/ https://www.ncbi.nlm.nih.gov/pubmed/15629030 http://dx.doi.org/10.1016/S1672-0229(03)01023-4 |
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