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Complete Genome Sequences of the SARS-CoV: the BJ Group (Isolates BJ01-BJ04)

Beijing has been one of the epicenters attacked most severely by the SARS-CoV (severe acute respiratory syndrome-associated coronavirus) since the first patient was diagnosed in one of the city’s hospitals. We now report complete genome sequences of the BJ Group, including four isolates (Isolates BJ...

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Autores principales: Bi, Shengli, Qin, E’de, Xu, Zuyuan, Li, Wei, Wang, Jing, Hu, Yongwu, Liu, Yong, Duan, Shumin, Hu, Jianfei, Han, Yujun, Xu, Jing, Li, Yan, Yi, Yao, Zhou, Yongdong, Lin, Wei, Wen, Jie, Xu, Hong, Li, Ruan, Zhang, Zizhang, Sun, Haiyan, Zhu, Jingui, Yu, Man, Fan, Baochang, Wu, Qingfa, Tang, Lin, Yang, Bao’an, Li, Guoqing, Peng, Wenming, Li, Wenjie, Jiang, Tao, Deng, Yajun, Liu, Bohua, Shi, Jianping, Deng, Yongqiang, Wei, Wei, Liu, Hong, Tong, Zongzhong, Zhang, Feng, Zhang, Yu, Wang, Cui’e, Li, Yuquan, Ye, Jia, Gan, Yonghua, Ji, Jia, Li, Xiaoyu, Tian, Xiangjun, Lu, Fushuang, Tan, Gang, Yang, Ruifu, Liu, Bin, Liu, Siqi, Li, Songgang, Wang, Jun, Wang, Jian, Cao, Wuchun, Yu, Jun, Dong, Xiaoping, Yang, Huanming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2003
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5172409/
https://www.ncbi.nlm.nih.gov/pubmed/15629030
http://dx.doi.org/10.1016/S1672-0229(03)01023-4
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author Bi, Shengli
Qin, E’de
Xu, Zuyuan
Li, Wei
Wang, Jing
Hu, Yongwu
Liu, Yong
Duan, Shumin
Hu, Jianfei
Han, Yujun
Xu, Jing
Li, Yan
Yi, Yao
Zhou, Yongdong
Lin, Wei
Wen, Jie
Xu, Hong
Li, Ruan
Zhang, Zizhang
Sun, Haiyan
Zhu, Jingui
Yu, Man
Fan, Baochang
Wu, Qingfa
Lin, Wei
Tang, Lin
Yang, Bao’an
Li, Guoqing
Peng, Wenming
Li, Wenjie
Jiang, Tao
Deng, Yajun
Liu, Bohua
Shi, Jianping
Deng, Yongqiang
Wei, Wei
Liu, Hong
Tong, Zongzhong
Zhang, Feng
Zhang, Yu
Wang, Cui’e
Li, Yuquan
Ye, Jia
Gan, Yonghua
Ji, Jia
Li, Xiaoyu
Tian, Xiangjun
Lu, Fushuang
Tan, Gang
Yang, Ruifu
Liu, Bin
Liu, Siqi
Li, Songgang
Wang, Jun
Wang, Jian
Cao, Wuchun
Yu, Jun
Dong, Xiaoping
Yang, Huanming
author_facet Bi, Shengli
Qin, E’de
Xu, Zuyuan
Li, Wei
Wang, Jing
Hu, Yongwu
Liu, Yong
Duan, Shumin
Hu, Jianfei
Han, Yujun
Xu, Jing
Li, Yan
Yi, Yao
Zhou, Yongdong
Lin, Wei
Wen, Jie
Xu, Hong
Li, Ruan
Zhang, Zizhang
Sun, Haiyan
Zhu, Jingui
Yu, Man
Fan, Baochang
Wu, Qingfa
Lin, Wei
Tang, Lin
Yang, Bao’an
Li, Guoqing
Peng, Wenming
Li, Wenjie
Jiang, Tao
Deng, Yajun
Liu, Bohua
Shi, Jianping
Deng, Yongqiang
Wei, Wei
Liu, Hong
Tong, Zongzhong
Zhang, Feng
Zhang, Yu
Wang, Cui’e
Li, Yuquan
Ye, Jia
Gan, Yonghua
Ji, Jia
Li, Xiaoyu
Tian, Xiangjun
Lu, Fushuang
Tan, Gang
Yang, Ruifu
Liu, Bin
Liu, Siqi
Li, Songgang
Wang, Jun
Wang, Jian
Cao, Wuchun
Yu, Jun
Dong, Xiaoping
Yang, Huanming
author_sort Bi, Shengli
collection PubMed
description Beijing has been one of the epicenters attacked most severely by the SARS-CoV (severe acute respiratory syndrome-associated coronavirus) since the first patient was diagnosed in one of the city’s hospitals. We now report complete genome sequences of the BJ Group, including four isolates (Isolates BJ01, BJ02, BJ03, and BJ04) of the SARS-CoV. It is remarkable that all members of the BJ Group share a common haplotype, consisting of seven loci that differentiate the group from other isolates published to date. Among 42 substitutions uniquely identified from the BJ group, 32 are non-synonymous changes at the amino acid level. Rooted phylogenetic trees, proposed on the basis of haplotypes and other sequence variations of SARS-CoV isolates from Canada, USA, Singapore, and China, gave rise to different paradigms but positioned the BJ Group, together with the newly discovered GD01 (GD-Ins29) in the same clade, followed by the H-U Group (from Hong Kong to USA) and the H-T Group (from Hong Kong to Toronto), leaving the SP Group (Singapore) more distant. This result appears to suggest a possible transmission path from Guangdong to Beijing/Hong Kong, then to other countries and regions.
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spelling pubmed-51724092016-12-23 Complete Genome Sequences of the SARS-CoV: the BJ Group (Isolates BJ01-BJ04) Bi, Shengli Qin, E’de Xu, Zuyuan Li, Wei Wang, Jing Hu, Yongwu Liu, Yong Duan, Shumin Hu, Jianfei Han, Yujun Xu, Jing Li, Yan Yi, Yao Zhou, Yongdong Lin, Wei Wen, Jie Xu, Hong Li, Ruan Zhang, Zizhang Sun, Haiyan Zhu, Jingui Yu, Man Fan, Baochang Wu, Qingfa Lin, Wei Tang, Lin Yang, Bao’an Li, Guoqing Peng, Wenming Li, Wenjie Jiang, Tao Deng, Yajun Liu, Bohua Shi, Jianping Deng, Yongqiang Wei, Wei Liu, Hong Tong, Zongzhong Zhang, Feng Zhang, Yu Wang, Cui’e Li, Yuquan Ye, Jia Gan, Yonghua Ji, Jia Li, Xiaoyu Tian, Xiangjun Lu, Fushuang Tan, Gang Yang, Ruifu Liu, Bin Liu, Siqi Li, Songgang Wang, Jun Wang, Jian Cao, Wuchun Yu, Jun Dong, Xiaoping Yang, Huanming Genomics Proteomics Bioinformatics Article Beijing has been one of the epicenters attacked most severely by the SARS-CoV (severe acute respiratory syndrome-associated coronavirus) since the first patient was diagnosed in one of the city’s hospitals. We now report complete genome sequences of the BJ Group, including four isolates (Isolates BJ01, BJ02, BJ03, and BJ04) of the SARS-CoV. It is remarkable that all members of the BJ Group share a common haplotype, consisting of seven loci that differentiate the group from other isolates published to date. Among 42 substitutions uniquely identified from the BJ group, 32 are non-synonymous changes at the amino acid level. Rooted phylogenetic trees, proposed on the basis of haplotypes and other sequence variations of SARS-CoV isolates from Canada, USA, Singapore, and China, gave rise to different paradigms but positioned the BJ Group, together with the newly discovered GD01 (GD-Ins29) in the same clade, followed by the H-U Group (from Hong Kong to USA) and the H-T Group (from Hong Kong to Toronto), leaving the SP Group (Singapore) more distant. This result appears to suggest a possible transmission path from Guangdong to Beijing/Hong Kong, then to other countries and regions. Elsevier 2003-08 2016-11-28 /pmc/articles/PMC5172409/ /pubmed/15629030 http://dx.doi.org/10.1016/S1672-0229(03)01023-4 Text en . http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Bi, Shengli
Qin, E’de
Xu, Zuyuan
Li, Wei
Wang, Jing
Hu, Yongwu
Liu, Yong
Duan, Shumin
Hu, Jianfei
Han, Yujun
Xu, Jing
Li, Yan
Yi, Yao
Zhou, Yongdong
Lin, Wei
Wen, Jie
Xu, Hong
Li, Ruan
Zhang, Zizhang
Sun, Haiyan
Zhu, Jingui
Yu, Man
Fan, Baochang
Wu, Qingfa
Lin, Wei
Tang, Lin
Yang, Bao’an
Li, Guoqing
Peng, Wenming
Li, Wenjie
Jiang, Tao
Deng, Yajun
Liu, Bohua
Shi, Jianping
Deng, Yongqiang
Wei, Wei
Liu, Hong
Tong, Zongzhong
Zhang, Feng
Zhang, Yu
Wang, Cui’e
Li, Yuquan
Ye, Jia
Gan, Yonghua
Ji, Jia
Li, Xiaoyu
Tian, Xiangjun
Lu, Fushuang
Tan, Gang
Yang, Ruifu
Liu, Bin
Liu, Siqi
Li, Songgang
Wang, Jun
Wang, Jian
Cao, Wuchun
Yu, Jun
Dong, Xiaoping
Yang, Huanming
Complete Genome Sequences of the SARS-CoV: the BJ Group (Isolates BJ01-BJ04)
title Complete Genome Sequences of the SARS-CoV: the BJ Group (Isolates BJ01-BJ04)
title_full Complete Genome Sequences of the SARS-CoV: the BJ Group (Isolates BJ01-BJ04)
title_fullStr Complete Genome Sequences of the SARS-CoV: the BJ Group (Isolates BJ01-BJ04)
title_full_unstemmed Complete Genome Sequences of the SARS-CoV: the BJ Group (Isolates BJ01-BJ04)
title_short Complete Genome Sequences of the SARS-CoV: the BJ Group (Isolates BJ01-BJ04)
title_sort complete genome sequences of the sars-cov: the bj group (isolates bj01-bj04)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5172409/
https://www.ncbi.nlm.nih.gov/pubmed/15629030
http://dx.doi.org/10.1016/S1672-0229(03)01023-4
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