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Identification and Characterization of 177 Unreported Genes Associated with Liver Regeneration

The mammalian liver has a very strong regeneration capacity after partial hepatectomy (PH). To further learn the genes participating in the liver regeneration (LR), 551 cDNAs selected from subtracted cDNA libraries of the regenerating rat liver were screened by microarray, and their expression profi...

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Autores principales: Xu, Cunshuan, Chang, Cuifang, Yuan, Jinyun, Han, Hongpeng, Yang, Kejin, Zhao, Lifeng, Li, Wenqiang, Li, Yuchang, Zhang, Huiyong, Rahman, Salman, Zhang, Jingbo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2004
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5172454/
https://www.ncbi.nlm.nih.gov/pubmed/15629050
http://dx.doi.org/10.1016/S1672-0229(04)02016-9
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author Xu, Cunshuan
Chang, Cuifang
Yuan, Jinyun
Han, Hongpeng
Yang, Kejin
Zhao, Lifeng
Li, Wenqiang
Li, Yuchang
Zhang, Huiyong
Rahman, Salman
Zhang, Jingbo
author_facet Xu, Cunshuan
Chang, Cuifang
Yuan, Jinyun
Han, Hongpeng
Yang, Kejin
Zhao, Lifeng
Li, Wenqiang
Li, Yuchang
Zhang, Huiyong
Rahman, Salman
Zhang, Jingbo
author_sort Xu, Cunshuan
collection PubMed
description The mammalian liver has a very strong regeneration capacity after partial hepatectomy (PH). To further learn the genes participating in the liver regeneration (LR), 551 cDNAs selected from subtracted cDNA libraries of the regenerating rat liver were screened by microarray, and their expression profiles were studied by cluster and generalization analyses. Among them, 177 genes were identified unreported and up- or down-regulated more than twofold at one or more time points after PH, of which 62 genes were down-regulated to less than 0.5; 99 genes were up-regulated to 2–10 folds, and 16 genes were either up- or down-regulated at different time points during LR. By using BLAST and GENSCAN, these genes were located on responsible chromosomes with 131 genes on the long arms of the chromosomes. The cluster and generalization analyses showed that the gene expression profiles are similar in 2 and 4, 12 and 16, 96 and 144 h respectively after PH, suggesting that the actions of the genes expressed in the same profiles are similar, and those expressed in different profiles have less similarity. However, the types, characteristics and functions of the 177 genes remain to be further studied.
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spelling pubmed-51724542016-12-23 Identification and Characterization of 177 Unreported Genes Associated with Liver Regeneration Xu, Cunshuan Chang, Cuifang Yuan, Jinyun Han, Hongpeng Yang, Kejin Zhao, Lifeng Li, Wenqiang Li, Yuchang Zhang, Huiyong Rahman, Salman Zhang, Jingbo Genomics Proteomics Bioinformatics Letter The mammalian liver has a very strong regeneration capacity after partial hepatectomy (PH). To further learn the genes participating in the liver regeneration (LR), 551 cDNAs selected from subtracted cDNA libraries of the regenerating rat liver were screened by microarray, and their expression profiles were studied by cluster and generalization analyses. Among them, 177 genes were identified unreported and up- or down-regulated more than twofold at one or more time points after PH, of which 62 genes were down-regulated to less than 0.5; 99 genes were up-regulated to 2–10 folds, and 16 genes were either up- or down-regulated at different time points during LR. By using BLAST and GENSCAN, these genes were located on responsible chromosomes with 131 genes on the long arms of the chromosomes. The cluster and generalization analyses showed that the gene expression profiles are similar in 2 and 4, 12 and 16, 96 and 144 h respectively after PH, suggesting that the actions of the genes expressed in the same profiles are similar, and those expressed in different profiles have less similarity. However, the types, characteristics and functions of the 177 genes remain to be further studied. Elsevier 2004-05 2016-11-28 /pmc/articles/PMC5172454/ /pubmed/15629050 http://dx.doi.org/10.1016/S1672-0229(04)02016-9 Text en . http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Letter
Xu, Cunshuan
Chang, Cuifang
Yuan, Jinyun
Han, Hongpeng
Yang, Kejin
Zhao, Lifeng
Li, Wenqiang
Li, Yuchang
Zhang, Huiyong
Rahman, Salman
Zhang, Jingbo
Identification and Characterization of 177 Unreported Genes Associated with Liver Regeneration
title Identification and Characterization of 177 Unreported Genes Associated with Liver Regeneration
title_full Identification and Characterization of 177 Unreported Genes Associated with Liver Regeneration
title_fullStr Identification and Characterization of 177 Unreported Genes Associated with Liver Regeneration
title_full_unstemmed Identification and Characterization of 177 Unreported Genes Associated with Liver Regeneration
title_short Identification and Characterization of 177 Unreported Genes Associated with Liver Regeneration
title_sort identification and characterization of 177 unreported genes associated with liver regeneration
topic Letter
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5172454/
https://www.ncbi.nlm.nih.gov/pubmed/15629050
http://dx.doi.org/10.1016/S1672-0229(04)02016-9
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