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An Improved Biclustering Algorithm and Its Application to Gene Expression Spectrum Analysis
Cheng and Church algorithm is an important approach in biclustering algorithms. In this paper, the process of the extended space in the second stage of Cheng and Church algorithm is improved and the selections of two important parameters are discussed. The results of the improved algorithm used in t...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2005
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5172552/ https://www.ncbi.nlm.nih.gov/pubmed/16487084 http://dx.doi.org/10.1016/S1672-0229(05)03024-X |
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author | Qu, Hua Wang, Liu-Pu Liang, Yan-Chun Wu, Chun-Guo |
author_facet | Qu, Hua Wang, Liu-Pu Liang, Yan-Chun Wu, Chun-Guo |
author_sort | Qu, Hua |
collection | PubMed |
description | Cheng and Church algorithm is an important approach in biclustering algorithms. In this paper, the process of the extended space in the second stage of Cheng and Church algorithm is improved and the selections of two important parameters are discussed. The results of the improved algorithm used in the gene expression spectrum analysis show that, compared with Cheng and Church algorithm, the quality of clustering results is enhanced obviously, the mining expression models are better, and the data possess a strong consistency with fluctuation on the condition while the computational time does not increase significantly. |
format | Online Article Text |
id | pubmed-5172552 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2005 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-51725522016-12-23 An Improved Biclustering Algorithm and Its Application to Gene Expression Spectrum Analysis Qu, Hua Wang, Liu-Pu Liang, Yan-Chun Wu, Chun-Guo Genomics Proteomics Bioinformatics Method Cheng and Church algorithm is an important approach in biclustering algorithms. In this paper, the process of the extended space in the second stage of Cheng and Church algorithm is improved and the selections of two important parameters are discussed. The results of the improved algorithm used in the gene expression spectrum analysis show that, compared with Cheng and Church algorithm, the quality of clustering results is enhanced obviously, the mining expression models are better, and the data possess a strong consistency with fluctuation on the condition while the computational time does not increase significantly. Elsevier 2005 2016-11-28 /pmc/articles/PMC5172552/ /pubmed/16487084 http://dx.doi.org/10.1016/S1672-0229(05)03024-X Text en . http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Method Qu, Hua Wang, Liu-Pu Liang, Yan-Chun Wu, Chun-Guo An Improved Biclustering Algorithm and Its Application to Gene Expression Spectrum Analysis |
title | An Improved Biclustering Algorithm and Its Application to Gene Expression Spectrum Analysis |
title_full | An Improved Biclustering Algorithm and Its Application to Gene Expression Spectrum Analysis |
title_fullStr | An Improved Biclustering Algorithm and Its Application to Gene Expression Spectrum Analysis |
title_full_unstemmed | An Improved Biclustering Algorithm and Its Application to Gene Expression Spectrum Analysis |
title_short | An Improved Biclustering Algorithm and Its Application to Gene Expression Spectrum Analysis |
title_sort | improved biclustering algorithm and its application to gene expression spectrum analysis |
topic | Method |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5172552/ https://www.ncbi.nlm.nih.gov/pubmed/16487084 http://dx.doi.org/10.1016/S1672-0229(05)03024-X |
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