MSAViewer: interactive JavaScript visualization of multiple sequence alignments

Summary: The MSAViewer is a quick and easy visualization and analysis JavaScript component for Multiple Sequence Alignment data of any size. Core features include interactive navigation through the alignment, application of popular color schemes, sorting, selecting and filtering. The MSAViewer is ‘w...

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Detalles Bibliográficos
Autores principales: Yachdav, Guy, Wilzbach, Sebastian, Rauscher, Benedikt, Sheridan, Robert, Sillitoe, Ian, Procter, James, Lewis, Suzanna E., Rost, Burkhard, Goldberg, Tatyana
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5181560/
https://www.ncbi.nlm.nih.gov/pubmed/27412096
http://dx.doi.org/10.1093/bioinformatics/btw474
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author Yachdav, Guy
Wilzbach, Sebastian
Rauscher, Benedikt
Sheridan, Robert
Sillitoe, Ian
Procter, James
Lewis, Suzanna E.
Rost, Burkhard
Goldberg, Tatyana
author_facet Yachdav, Guy
Wilzbach, Sebastian
Rauscher, Benedikt
Sheridan, Robert
Sillitoe, Ian
Procter, James
Lewis, Suzanna E.
Rost, Burkhard
Goldberg, Tatyana
author_sort Yachdav, Guy
collection PubMed
description Summary: The MSAViewer is a quick and easy visualization and analysis JavaScript component for Multiple Sequence Alignment data of any size. Core features include interactive navigation through the alignment, application of popular color schemes, sorting, selecting and filtering. The MSAViewer is ‘web ready’: written entirely in JavaScript, compatible with modern web browsers and does not require any specialized software. The MSAViewer is part of the BioJS collection of components. Availability and Implementation: The MSAViewer is released as open source software under the Boost Software License 1.0. Documentation, source code and the viewer are available at http://msa.biojs.net/. Supplementary information: Supplementary data are available at Bioinformatics online. Contact: msa@bio.sh
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spelling pubmed-51815602016-12-27 MSAViewer: interactive JavaScript visualization of multiple sequence alignments Yachdav, Guy Wilzbach, Sebastian Rauscher, Benedikt Sheridan, Robert Sillitoe, Ian Procter, James Lewis, Suzanna E. Rost, Burkhard Goldberg, Tatyana Bioinformatics Applications Notes Summary: The MSAViewer is a quick and easy visualization and analysis JavaScript component for Multiple Sequence Alignment data of any size. Core features include interactive navigation through the alignment, application of popular color schemes, sorting, selecting and filtering. The MSAViewer is ‘web ready’: written entirely in JavaScript, compatible with modern web browsers and does not require any specialized software. The MSAViewer is part of the BioJS collection of components. Availability and Implementation: The MSAViewer is released as open source software under the Boost Software License 1.0. Documentation, source code and the viewer are available at http://msa.biojs.net/. Supplementary information: Supplementary data are available at Bioinformatics online. Contact: msa@bio.sh Oxford University Press 2016-11-15 2016-07-13 /pmc/articles/PMC5181560/ /pubmed/27412096 http://dx.doi.org/10.1093/bioinformatics/btw474 Text en © The Author 2016. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Applications Notes
Yachdav, Guy
Wilzbach, Sebastian
Rauscher, Benedikt
Sheridan, Robert
Sillitoe, Ian
Procter, James
Lewis, Suzanna E.
Rost, Burkhard
Goldberg, Tatyana
MSAViewer: interactive JavaScript visualization of multiple sequence alignments
title MSAViewer: interactive JavaScript visualization of multiple sequence alignments
title_full MSAViewer: interactive JavaScript visualization of multiple sequence alignments
title_fullStr MSAViewer: interactive JavaScript visualization of multiple sequence alignments
title_full_unstemmed MSAViewer: interactive JavaScript visualization of multiple sequence alignments
title_short MSAViewer: interactive JavaScript visualization of multiple sequence alignments
title_sort msaviewer: interactive javascript visualization of multiple sequence alignments
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5181560/
https://www.ncbi.nlm.nih.gov/pubmed/27412096
http://dx.doi.org/10.1093/bioinformatics/btw474
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