Online interactive analysis of protein structure ensembles with Bio3D-web

Summary: Bio3D-web is an online application for analyzing the sequence, structure and conformational heterogeneity of protein families. Major functionality is provided for identifying protein structure sets for analysis, their alignment and refined structure superposition, sequence and structure con...

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Detalles Bibliográficos
Autores principales: Skjærven, Lars, Jariwala, Shashank, Yao, Xin-Qiu, Grant, Barry J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5181562/
https://www.ncbi.nlm.nih.gov/pubmed/27423893
http://dx.doi.org/10.1093/bioinformatics/btw482
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author Skjærven, Lars
Jariwala, Shashank
Yao, Xin-Qiu
Grant, Barry J.
author_facet Skjærven, Lars
Jariwala, Shashank
Yao, Xin-Qiu
Grant, Barry J.
author_sort Skjærven, Lars
collection PubMed
description Summary: Bio3D-web is an online application for analyzing the sequence, structure and conformational heterogeneity of protein families. Major functionality is provided for identifying protein structure sets for analysis, their alignment and refined structure superposition, sequence and structure conservation analysis, mapping and clustering of conformations and the quantitative comparison of their predicted structural dynamics. Availability: Bio3D-web is based on the Bio3D and Shiny R packages. All major browsers are supported and full source code is available under a GPL2 license from http://thegrantlab.org/bio3d-web. Contact: bjgrant@umich.edu or lars.skjarven@uib.no
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spelling pubmed-51815622016-12-27 Online interactive analysis of protein structure ensembles with Bio3D-web Skjærven, Lars Jariwala, Shashank Yao, Xin-Qiu Grant, Barry J. Bioinformatics Applications Notes Summary: Bio3D-web is an online application for analyzing the sequence, structure and conformational heterogeneity of protein families. Major functionality is provided for identifying protein structure sets for analysis, their alignment and refined structure superposition, sequence and structure conservation analysis, mapping and clustering of conformations and the quantitative comparison of their predicted structural dynamics. Availability: Bio3D-web is based on the Bio3D and Shiny R packages. All major browsers are supported and full source code is available under a GPL2 license from http://thegrantlab.org/bio3d-web. Contact: bjgrant@umich.edu or lars.skjarven@uib.no Oxford University Press 2016-11-15 2016-07-16 /pmc/articles/PMC5181562/ /pubmed/27423893 http://dx.doi.org/10.1093/bioinformatics/btw482 Text en © The Author 2016. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Skjærven, Lars
Jariwala, Shashank
Yao, Xin-Qiu
Grant, Barry J.
Online interactive analysis of protein structure ensembles with Bio3D-web
title Online interactive analysis of protein structure ensembles with Bio3D-web
title_full Online interactive analysis of protein structure ensembles with Bio3D-web
title_fullStr Online interactive analysis of protein structure ensembles with Bio3D-web
title_full_unstemmed Online interactive analysis of protein structure ensembles with Bio3D-web
title_short Online interactive analysis of protein structure ensembles with Bio3D-web
title_sort online interactive analysis of protein structure ensembles with bio3d-web
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5181562/
https://www.ncbi.nlm.nih.gov/pubmed/27423893
http://dx.doi.org/10.1093/bioinformatics/btw482
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