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Error Propagation in Isometric Log-ratio Coordinates for Compositional Data: Theoretical and Practical Considerations

Compositional data, as they typically appear in geochemistry in terms of concentrations of chemical elements in soil samples, need to be expressed in log-ratio coordinates before applying the traditional statistical tools if the relative structure of the data is of primary interest. There are differ...

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Detalles Bibliográficos
Autores principales: Mert, Mehmet Can, Filzmoser, Peter, Hron, Karel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5181651/
https://www.ncbi.nlm.nih.gov/pubmed/28316755
http://dx.doi.org/10.1007/s11004-016-9646-x
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author Mert, Mehmet Can
Filzmoser, Peter
Hron, Karel
author_facet Mert, Mehmet Can
Filzmoser, Peter
Hron, Karel
author_sort Mert, Mehmet Can
collection PubMed
description Compositional data, as they typically appear in geochemistry in terms of concentrations of chemical elements in soil samples, need to be expressed in log-ratio coordinates before applying the traditional statistical tools if the relative structure of the data is of primary interest. There are different possibilities for this purpose, like centered log-ratio coefficients, or isometric log-ratio coordinates. In both the approaches, geometric means of the compositional parts are involved, and it is unclear how measurement errors or detection limit problems affect their presentation in coordinates. This problem is investigated theoretically by making use of the theory of error propagation. Due to certain limitations of this approach, the effect of error propagation is also studied by means of simulations. This allows to provide recommendations for practitioners on the amount of error and on the expected distortion of the results, depending on the purpose of the analysis.
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spelling pubmed-51816512017-03-17 Error Propagation in Isometric Log-ratio Coordinates for Compositional Data: Theoretical and Practical Considerations Mert, Mehmet Can Filzmoser, Peter Hron, Karel Math Geosci Original Paper Compositional data, as they typically appear in geochemistry in terms of concentrations of chemical elements in soil samples, need to be expressed in log-ratio coordinates before applying the traditional statistical tools if the relative structure of the data is of primary interest. There are different possibilities for this purpose, like centered log-ratio coefficients, or isometric log-ratio coordinates. In both the approaches, geometric means of the compositional parts are involved, and it is unclear how measurement errors or detection limit problems affect their presentation in coordinates. This problem is investigated theoretically by making use of the theory of error propagation. Due to certain limitations of this approach, the effect of error propagation is also studied by means of simulations. This allows to provide recommendations for practitioners on the amount of error and on the expected distortion of the results, depending on the purpose of the analysis. Springer Berlin Heidelberg 2016-07-07 2016 /pmc/articles/PMC5181651/ /pubmed/28316755 http://dx.doi.org/10.1007/s11004-016-9646-x Text en © The Author(s) 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Original Paper
Mert, Mehmet Can
Filzmoser, Peter
Hron, Karel
Error Propagation in Isometric Log-ratio Coordinates for Compositional Data: Theoretical and Practical Considerations
title Error Propagation in Isometric Log-ratio Coordinates for Compositional Data: Theoretical and Practical Considerations
title_full Error Propagation in Isometric Log-ratio Coordinates for Compositional Data: Theoretical and Practical Considerations
title_fullStr Error Propagation in Isometric Log-ratio Coordinates for Compositional Data: Theoretical and Practical Considerations
title_full_unstemmed Error Propagation in Isometric Log-ratio Coordinates for Compositional Data: Theoretical and Practical Considerations
title_short Error Propagation in Isometric Log-ratio Coordinates for Compositional Data: Theoretical and Practical Considerations
title_sort error propagation in isometric log-ratio coordinates for compositional data: theoretical and practical considerations
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5181651/
https://www.ncbi.nlm.nih.gov/pubmed/28316755
http://dx.doi.org/10.1007/s11004-016-9646-x
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