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Error Propagation in Isometric Log-ratio Coordinates for Compositional Data: Theoretical and Practical Considerations
Compositional data, as they typically appear in geochemistry in terms of concentrations of chemical elements in soil samples, need to be expressed in log-ratio coordinates before applying the traditional statistical tools if the relative structure of the data is of primary interest. There are differ...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5181651/ https://www.ncbi.nlm.nih.gov/pubmed/28316755 http://dx.doi.org/10.1007/s11004-016-9646-x |
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author | Mert, Mehmet Can Filzmoser, Peter Hron, Karel |
author_facet | Mert, Mehmet Can Filzmoser, Peter Hron, Karel |
author_sort | Mert, Mehmet Can |
collection | PubMed |
description | Compositional data, as they typically appear in geochemistry in terms of concentrations of chemical elements in soil samples, need to be expressed in log-ratio coordinates before applying the traditional statistical tools if the relative structure of the data is of primary interest. There are different possibilities for this purpose, like centered log-ratio coefficients, or isometric log-ratio coordinates. In both the approaches, geometric means of the compositional parts are involved, and it is unclear how measurement errors or detection limit problems affect their presentation in coordinates. This problem is investigated theoretically by making use of the theory of error propagation. Due to certain limitations of this approach, the effect of error propagation is also studied by means of simulations. This allows to provide recommendations for practitioners on the amount of error and on the expected distortion of the results, depending on the purpose of the analysis. |
format | Online Article Text |
id | pubmed-5181651 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-51816512017-03-17 Error Propagation in Isometric Log-ratio Coordinates for Compositional Data: Theoretical and Practical Considerations Mert, Mehmet Can Filzmoser, Peter Hron, Karel Math Geosci Original Paper Compositional data, as they typically appear in geochemistry in terms of concentrations of chemical elements in soil samples, need to be expressed in log-ratio coordinates before applying the traditional statistical tools if the relative structure of the data is of primary interest. There are different possibilities for this purpose, like centered log-ratio coefficients, or isometric log-ratio coordinates. In both the approaches, geometric means of the compositional parts are involved, and it is unclear how measurement errors or detection limit problems affect their presentation in coordinates. This problem is investigated theoretically by making use of the theory of error propagation. Due to certain limitations of this approach, the effect of error propagation is also studied by means of simulations. This allows to provide recommendations for practitioners on the amount of error and on the expected distortion of the results, depending on the purpose of the analysis. Springer Berlin Heidelberg 2016-07-07 2016 /pmc/articles/PMC5181651/ /pubmed/28316755 http://dx.doi.org/10.1007/s11004-016-9646-x Text en © The Author(s) 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Original Paper Mert, Mehmet Can Filzmoser, Peter Hron, Karel Error Propagation in Isometric Log-ratio Coordinates for Compositional Data: Theoretical and Practical Considerations |
title | Error Propagation in Isometric Log-ratio
Coordinates for Compositional Data: Theoretical and Practical
Considerations |
title_full | Error Propagation in Isometric Log-ratio
Coordinates for Compositional Data: Theoretical and Practical
Considerations |
title_fullStr | Error Propagation in Isometric Log-ratio
Coordinates for Compositional Data: Theoretical and Practical
Considerations |
title_full_unstemmed | Error Propagation in Isometric Log-ratio
Coordinates for Compositional Data: Theoretical and Practical
Considerations |
title_short | Error Propagation in Isometric Log-ratio
Coordinates for Compositional Data: Theoretical and Practical
Considerations |
title_sort | error propagation in isometric log-ratio
coordinates for compositional data: theoretical and practical
considerations |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5181651/ https://www.ncbi.nlm.nih.gov/pubmed/28316755 http://dx.doi.org/10.1007/s11004-016-9646-x |
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