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An extensive comparison of species-abundance distribution models

A number of different models have been proposed as descriptions of the species-abundance distribution (SAD). Most evaluations of these models use only one or two models, focus on only a single ecosystem or taxonomic group, or fail to use appropriate statistical methods. We use likelihood and AIC to...

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Autores principales: Baldridge, Elita, Harris, David J., Xiao, Xiao, White, Ethan P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5183127/
https://www.ncbi.nlm.nih.gov/pubmed/28028483
http://dx.doi.org/10.7717/peerj.2823
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author Baldridge, Elita
Harris, David J.
Xiao, Xiao
White, Ethan P.
author_facet Baldridge, Elita
Harris, David J.
Xiao, Xiao
White, Ethan P.
author_sort Baldridge, Elita
collection PubMed
description A number of different models have been proposed as descriptions of the species-abundance distribution (SAD). Most evaluations of these models use only one or two models, focus on only a single ecosystem or taxonomic group, or fail to use appropriate statistical methods. We use likelihood and AIC to compare the fit of four of the most widely used models to data on over 16,000 communities from a diverse array of taxonomic groups and ecosystems. Across all datasets combined the log-series, Poisson lognormal, and negative binomial all yield similar overall fits to the data. Therefore, when correcting for differences in the number of parameters the log-series generally provides the best fit to data. Within individual datasets some other distributions performed nearly as well as the log-series even after correcting for the number of parameters. The Zipf distribution is generally a poor characterization of the SAD.
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spelling pubmed-51831272016-12-27 An extensive comparison of species-abundance distribution models Baldridge, Elita Harris, David J. Xiao, Xiao White, Ethan P. PeerJ Computational Biology A number of different models have been proposed as descriptions of the species-abundance distribution (SAD). Most evaluations of these models use only one or two models, focus on only a single ecosystem or taxonomic group, or fail to use appropriate statistical methods. We use likelihood and AIC to compare the fit of four of the most widely used models to data on over 16,000 communities from a diverse array of taxonomic groups and ecosystems. Across all datasets combined the log-series, Poisson lognormal, and negative binomial all yield similar overall fits to the data. Therefore, when correcting for differences in the number of parameters the log-series generally provides the best fit to data. Within individual datasets some other distributions performed nearly as well as the log-series even after correcting for the number of parameters. The Zipf distribution is generally a poor characterization of the SAD. PeerJ Inc. 2016-12-22 /pmc/articles/PMC5183127/ /pubmed/28028483 http://dx.doi.org/10.7717/peerj.2823 Text en ©2016 Baldridge et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Computational Biology
Baldridge, Elita
Harris, David J.
Xiao, Xiao
White, Ethan P.
An extensive comparison of species-abundance distribution models
title An extensive comparison of species-abundance distribution models
title_full An extensive comparison of species-abundance distribution models
title_fullStr An extensive comparison of species-abundance distribution models
title_full_unstemmed An extensive comparison of species-abundance distribution models
title_short An extensive comparison of species-abundance distribution models
title_sort extensive comparison of species-abundance distribution models
topic Computational Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5183127/
https://www.ncbi.nlm.nih.gov/pubmed/28028483
http://dx.doi.org/10.7717/peerj.2823
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