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An extensive comparison of species-abundance distribution models
A number of different models have been proposed as descriptions of the species-abundance distribution (SAD). Most evaluations of these models use only one or two models, focus on only a single ecosystem or taxonomic group, or fail to use appropriate statistical methods. We use likelihood and AIC to...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5183127/ https://www.ncbi.nlm.nih.gov/pubmed/28028483 http://dx.doi.org/10.7717/peerj.2823 |
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author | Baldridge, Elita Harris, David J. Xiao, Xiao White, Ethan P. |
author_facet | Baldridge, Elita Harris, David J. Xiao, Xiao White, Ethan P. |
author_sort | Baldridge, Elita |
collection | PubMed |
description | A number of different models have been proposed as descriptions of the species-abundance distribution (SAD). Most evaluations of these models use only one or two models, focus on only a single ecosystem or taxonomic group, or fail to use appropriate statistical methods. We use likelihood and AIC to compare the fit of four of the most widely used models to data on over 16,000 communities from a diverse array of taxonomic groups and ecosystems. Across all datasets combined the log-series, Poisson lognormal, and negative binomial all yield similar overall fits to the data. Therefore, when correcting for differences in the number of parameters the log-series generally provides the best fit to data. Within individual datasets some other distributions performed nearly as well as the log-series even after correcting for the number of parameters. The Zipf distribution is generally a poor characterization of the SAD. |
format | Online Article Text |
id | pubmed-5183127 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-51831272016-12-27 An extensive comparison of species-abundance distribution models Baldridge, Elita Harris, David J. Xiao, Xiao White, Ethan P. PeerJ Computational Biology A number of different models have been proposed as descriptions of the species-abundance distribution (SAD). Most evaluations of these models use only one or two models, focus on only a single ecosystem or taxonomic group, or fail to use appropriate statistical methods. We use likelihood and AIC to compare the fit of four of the most widely used models to data on over 16,000 communities from a diverse array of taxonomic groups and ecosystems. Across all datasets combined the log-series, Poisson lognormal, and negative binomial all yield similar overall fits to the data. Therefore, when correcting for differences in the number of parameters the log-series generally provides the best fit to data. Within individual datasets some other distributions performed nearly as well as the log-series even after correcting for the number of parameters. The Zipf distribution is generally a poor characterization of the SAD. PeerJ Inc. 2016-12-22 /pmc/articles/PMC5183127/ /pubmed/28028483 http://dx.doi.org/10.7717/peerj.2823 Text en ©2016 Baldridge et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Computational Biology Baldridge, Elita Harris, David J. Xiao, Xiao White, Ethan P. An extensive comparison of species-abundance distribution models |
title | An extensive comparison of species-abundance distribution models |
title_full | An extensive comparison of species-abundance distribution models |
title_fullStr | An extensive comparison of species-abundance distribution models |
title_full_unstemmed | An extensive comparison of species-abundance distribution models |
title_short | An extensive comparison of species-abundance distribution models |
title_sort | extensive comparison of species-abundance distribution models |
topic | Computational Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5183127/ https://www.ncbi.nlm.nih.gov/pubmed/28028483 http://dx.doi.org/10.7717/peerj.2823 |
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