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Looking inside the Ocean: Toward an Autonomous Imaging System for Monitoring Gelatinous Zooplankton

Marine plankton abundance and dynamics in the open and interior ocean is still an unknown field. The knowledge of gelatinous zooplankton distribution is especially challenging, because this type of plankton has a very fragile structure and cannot be directly sampled using traditional net based techn...

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Autores principales: Corgnati, Lorenzo, Marini, Simone, Mazzei, Luca, Ottaviani, Ennio, Aliani, Stefano, Conversi, Alessandra, Griffa, Annalisa
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5191104/
https://www.ncbi.nlm.nih.gov/pubmed/27983638
http://dx.doi.org/10.3390/s16122124
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author Corgnati, Lorenzo
Marini, Simone
Mazzei, Luca
Ottaviani, Ennio
Aliani, Stefano
Conversi, Alessandra
Griffa, Annalisa
author_facet Corgnati, Lorenzo
Marini, Simone
Mazzei, Luca
Ottaviani, Ennio
Aliani, Stefano
Conversi, Alessandra
Griffa, Annalisa
author_sort Corgnati, Lorenzo
collection PubMed
description Marine plankton abundance and dynamics in the open and interior ocean is still an unknown field. The knowledge of gelatinous zooplankton distribution is especially challenging, because this type of plankton has a very fragile structure and cannot be directly sampled using traditional net based techniques. To overcome this shortcoming, Computer Vision techniques can be successfully used for the automatic monitoring of this group.This paper presents the GUARD1 imaging system, a low-cost stand-alone instrument for underwater image acquisition and recognition of gelatinous zooplankton, and discusses the performance of three different methodologies, Tikhonov Regularization, Support Vector Machines and Genetic Programming, that have been compared in order to select the one to be run onboard the system for the automatic recognition of gelatinous zooplankton. The performance comparison results highlight the high accuracy of the three methods in gelatinous zooplankton identification, showing their good capability in robustly selecting relevant features. In particular, Genetic Programming technique achieves the same performances of the other two methods by using a smaller set of features, thus being the most efficient in avoiding computationally consuming preprocessing stages, that is a crucial requirement for running on an autonomous imaging system designed for long lasting deployments, like the GUARD1. The Genetic Programming algorithm has been installed onboard the system, that has been operationally tested in a two-months survey in the Ligurian Sea, providing satisfactory results in terms of monitoring and recognition performances.
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spelling pubmed-51911042017-01-03 Looking inside the Ocean: Toward an Autonomous Imaging System for Monitoring Gelatinous Zooplankton Corgnati, Lorenzo Marini, Simone Mazzei, Luca Ottaviani, Ennio Aliani, Stefano Conversi, Alessandra Griffa, Annalisa Sensors (Basel) Article Marine plankton abundance and dynamics in the open and interior ocean is still an unknown field. The knowledge of gelatinous zooplankton distribution is especially challenging, because this type of plankton has a very fragile structure and cannot be directly sampled using traditional net based techniques. To overcome this shortcoming, Computer Vision techniques can be successfully used for the automatic monitoring of this group.This paper presents the GUARD1 imaging system, a low-cost stand-alone instrument for underwater image acquisition and recognition of gelatinous zooplankton, and discusses the performance of three different methodologies, Tikhonov Regularization, Support Vector Machines and Genetic Programming, that have been compared in order to select the one to be run onboard the system for the automatic recognition of gelatinous zooplankton. The performance comparison results highlight the high accuracy of the three methods in gelatinous zooplankton identification, showing their good capability in robustly selecting relevant features. In particular, Genetic Programming technique achieves the same performances of the other two methods by using a smaller set of features, thus being the most efficient in avoiding computationally consuming preprocessing stages, that is a crucial requirement for running on an autonomous imaging system designed for long lasting deployments, like the GUARD1. The Genetic Programming algorithm has been installed onboard the system, that has been operationally tested in a two-months survey in the Ligurian Sea, providing satisfactory results in terms of monitoring and recognition performances. MDPI 2016-12-14 /pmc/articles/PMC5191104/ /pubmed/27983638 http://dx.doi.org/10.3390/s16122124 Text en © 2016 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC-BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Corgnati, Lorenzo
Marini, Simone
Mazzei, Luca
Ottaviani, Ennio
Aliani, Stefano
Conversi, Alessandra
Griffa, Annalisa
Looking inside the Ocean: Toward an Autonomous Imaging System for Monitoring Gelatinous Zooplankton
title Looking inside the Ocean: Toward an Autonomous Imaging System for Monitoring Gelatinous Zooplankton
title_full Looking inside the Ocean: Toward an Autonomous Imaging System for Monitoring Gelatinous Zooplankton
title_fullStr Looking inside the Ocean: Toward an Autonomous Imaging System for Monitoring Gelatinous Zooplankton
title_full_unstemmed Looking inside the Ocean: Toward an Autonomous Imaging System for Monitoring Gelatinous Zooplankton
title_short Looking inside the Ocean: Toward an Autonomous Imaging System for Monitoring Gelatinous Zooplankton
title_sort looking inside the ocean: toward an autonomous imaging system for monitoring gelatinous zooplankton
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5191104/
https://www.ncbi.nlm.nih.gov/pubmed/27983638
http://dx.doi.org/10.3390/s16122124
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