Cargando…

Genetic identification of marine eels through DNA barcoding from Parangipettai coastal waters

Anguilliformes, also known as “true eels”, are an ecologically diverse group of predominantly marine origin whose members were easily recognized by their extremely elongated bodies with reduced cross-sectional areas and universal lack of pelvic fins. The Marine Eels were collected from landing centr...

Descripción completa

Detalles Bibliográficos
Autores principales: Peninal, Samuel, Subramanian, Janakiraman, Elavarasi, Alaganatham, Kalaiselvam, Murugaiyan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5198627/
https://www.ncbi.nlm.nih.gov/pubmed/28053872
http://dx.doi.org/10.1016/j.gdata.2016.12.002
_version_ 1782488877186940928
author Peninal, Samuel
Subramanian, Janakiraman
Elavarasi, Alaganatham
Kalaiselvam, Murugaiyan
author_facet Peninal, Samuel
Subramanian, Janakiraman
Elavarasi, Alaganatham
Kalaiselvam, Murugaiyan
author_sort Peninal, Samuel
collection PubMed
description Anguilliformes, also known as “true eels”, are an ecologically diverse group of predominantly marine origin whose members were easily recognized by their extremely elongated bodies with reduced cross-sectional areas and universal lack of pelvic fins. The Marine Eels were collected from landing centres of Parangipettai coastal waters and identified based on their morphometric and meristic characters. The newly recorded species were used for the barcoding analysis. Information on molecular taxonomy of marine eels was very meagre and hence, the present study was aimed to study the barcoding of marine eels which were present along the southeast coast of India. The cube of lateral muscle was exercised for DNA isolation followed by its amplification. Cluster IX 2.06 was used to align the nucleotide sequences (Thomson, 1997). The evolutionary history was inferred using the Neighbor-Joining method (Saitou and Nei, 1987). The evolutionary distances were computed using the Maximum Composite Likelihood method (Tamura et al., 2004). The barcodes sequences were submitted in NCBI (National centre for Biotechnological Information). The species within genera of Muraenidae, Muraenesocidae and Ophichthidae family were clustered in a same clade with high bootstrap value. The evolutionary relationships of six species were analyzed using neighbor joining method. This results of phylogenetic tree showed maximum genetic relatedness with the sequenced results which were submitted in gene bank.
format Online
Article
Text
id pubmed-5198627
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-51986272017-01-04 Genetic identification of marine eels through DNA barcoding from Parangipettai coastal waters Peninal, Samuel Subramanian, Janakiraman Elavarasi, Alaganatham Kalaiselvam, Murugaiyan Genom Data Regular Article Anguilliformes, also known as “true eels”, are an ecologically diverse group of predominantly marine origin whose members were easily recognized by their extremely elongated bodies with reduced cross-sectional areas and universal lack of pelvic fins. The Marine Eels were collected from landing centres of Parangipettai coastal waters and identified based on their morphometric and meristic characters. The newly recorded species were used for the barcoding analysis. Information on molecular taxonomy of marine eels was very meagre and hence, the present study was aimed to study the barcoding of marine eels which were present along the southeast coast of India. The cube of lateral muscle was exercised for DNA isolation followed by its amplification. Cluster IX 2.06 was used to align the nucleotide sequences (Thomson, 1997). The evolutionary history was inferred using the Neighbor-Joining method (Saitou and Nei, 1987). The evolutionary distances were computed using the Maximum Composite Likelihood method (Tamura et al., 2004). The barcodes sequences were submitted in NCBI (National centre for Biotechnological Information). The species within genera of Muraenidae, Muraenesocidae and Ophichthidae family were clustered in a same clade with high bootstrap value. The evolutionary relationships of six species were analyzed using neighbor joining method. This results of phylogenetic tree showed maximum genetic relatedness with the sequenced results which were submitted in gene bank. Elsevier 2016-12-09 /pmc/articles/PMC5198627/ /pubmed/28053872 http://dx.doi.org/10.1016/j.gdata.2016.12.002 Text en © 2016 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Regular Article
Peninal, Samuel
Subramanian, Janakiraman
Elavarasi, Alaganatham
Kalaiselvam, Murugaiyan
Genetic identification of marine eels through DNA barcoding from Parangipettai coastal waters
title Genetic identification of marine eels through DNA barcoding from Parangipettai coastal waters
title_full Genetic identification of marine eels through DNA barcoding from Parangipettai coastal waters
title_fullStr Genetic identification of marine eels through DNA barcoding from Parangipettai coastal waters
title_full_unstemmed Genetic identification of marine eels through DNA barcoding from Parangipettai coastal waters
title_short Genetic identification of marine eels through DNA barcoding from Parangipettai coastal waters
title_sort genetic identification of marine eels through dna barcoding from parangipettai coastal waters
topic Regular Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5198627/
https://www.ncbi.nlm.nih.gov/pubmed/28053872
http://dx.doi.org/10.1016/j.gdata.2016.12.002
work_keys_str_mv AT peninalsamuel geneticidentificationofmarineeelsthroughdnabarcodingfromparangipettaicoastalwaters
AT subramanianjanakiraman geneticidentificationofmarineeelsthroughdnabarcodingfromparangipettaicoastalwaters
AT elavarasialaganatham geneticidentificationofmarineeelsthroughdnabarcodingfromparangipettaicoastalwaters
AT kalaiselvammurugaiyan geneticidentificationofmarineeelsthroughdnabarcodingfromparangipettaicoastalwaters