Cargando…

Identification of Potential Key lncRNAs and Genes Associated with Aging Based on Microarray Data of Adipocytes from Mice

Objective. This study aimed to screen potential crucial lncRNAs and genes involved in aging. Methods. The data of 9 peripheral white adipocytes, respectively, taken from male C57BL/6J mice (6 months, 14 months, and 18 months of age) in GSE25905 were used in this study. Differentially time series exp...

Descripción completa

Detalles Bibliográficos
Autores principales: Yang, Yi, Teng, Zongyan, Meng, Songyan, Yu, Weigang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5209599/
https://www.ncbi.nlm.nih.gov/pubmed/28097151
http://dx.doi.org/10.1155/2016/9181702
_version_ 1782490757922291712
author Yang, Yi
Teng, Zongyan
Meng, Songyan
Yu, Weigang
author_facet Yang, Yi
Teng, Zongyan
Meng, Songyan
Yu, Weigang
author_sort Yang, Yi
collection PubMed
description Objective. This study aimed to screen potential crucial lncRNAs and genes involved in aging. Methods. The data of 9 peripheral white adipocytes, respectively, taken from male C57BL/6J mice (6 months, 14 months, and 18 months of age) in GSE25905 were used in this study. Differentially time series expressed lncRNA genes (DE-lncRNAs) and mRNA genes (DEGs) were identified. After cluster analysis of lncRNAs expression pattern, target genes of DE-lncRNAs were predicted from the DEGs, and functional analysis for target genes was conducted. Results. A total of 8301 time series-related DEGs and 43 time series-related DE-lncRNAs were identified. Among them, 41 DE-lncRNAs targeted 1880 DEGs. The DEGs positively regulated by DE-lncRNAs were mainly related to the development of blood vessel and the pathways of cholesterol biosynthesis and elastic fibre formation. Furthermore, the DEGs negatively regulated by DE-lncRNAs were correlated with protein metabolism. Conclusion. These DE-lncRNAs and DEGs are potentially involved in the process of aging.
format Online
Article
Text
id pubmed-5209599
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Hindawi Publishing Corporation
record_format MEDLINE/PubMed
spelling pubmed-52095992017-01-17 Identification of Potential Key lncRNAs and Genes Associated with Aging Based on Microarray Data of Adipocytes from Mice Yang, Yi Teng, Zongyan Meng, Songyan Yu, Weigang Biomed Res Int Research Article Objective. This study aimed to screen potential crucial lncRNAs and genes involved in aging. Methods. The data of 9 peripheral white adipocytes, respectively, taken from male C57BL/6J mice (6 months, 14 months, and 18 months of age) in GSE25905 were used in this study. Differentially time series expressed lncRNA genes (DE-lncRNAs) and mRNA genes (DEGs) were identified. After cluster analysis of lncRNAs expression pattern, target genes of DE-lncRNAs were predicted from the DEGs, and functional analysis for target genes was conducted. Results. A total of 8301 time series-related DEGs and 43 time series-related DE-lncRNAs were identified. Among them, 41 DE-lncRNAs targeted 1880 DEGs. The DEGs positively regulated by DE-lncRNAs were mainly related to the development of blood vessel and the pathways of cholesterol biosynthesis and elastic fibre formation. Furthermore, the DEGs negatively regulated by DE-lncRNAs were correlated with protein metabolism. Conclusion. These DE-lncRNAs and DEGs are potentially involved in the process of aging. Hindawi Publishing Corporation 2016 2016-12-21 /pmc/articles/PMC5209599/ /pubmed/28097151 http://dx.doi.org/10.1155/2016/9181702 Text en Copyright © 2016 Yi Yang et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Yang, Yi
Teng, Zongyan
Meng, Songyan
Yu, Weigang
Identification of Potential Key lncRNAs and Genes Associated with Aging Based on Microarray Data of Adipocytes from Mice
title Identification of Potential Key lncRNAs and Genes Associated with Aging Based on Microarray Data of Adipocytes from Mice
title_full Identification of Potential Key lncRNAs and Genes Associated with Aging Based on Microarray Data of Adipocytes from Mice
title_fullStr Identification of Potential Key lncRNAs and Genes Associated with Aging Based on Microarray Data of Adipocytes from Mice
title_full_unstemmed Identification of Potential Key lncRNAs and Genes Associated with Aging Based on Microarray Data of Adipocytes from Mice
title_short Identification of Potential Key lncRNAs and Genes Associated with Aging Based on Microarray Data of Adipocytes from Mice
title_sort identification of potential key lncrnas and genes associated with aging based on microarray data of adipocytes from mice
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5209599/
https://www.ncbi.nlm.nih.gov/pubmed/28097151
http://dx.doi.org/10.1155/2016/9181702
work_keys_str_mv AT yangyi identificationofpotentialkeylncrnasandgenesassociatedwithagingbasedonmicroarraydataofadipocytesfrommice
AT tengzongyan identificationofpotentialkeylncrnasandgenesassociatedwithagingbasedonmicroarraydataofadipocytesfrommice
AT mengsongyan identificationofpotentialkeylncrnasandgenesassociatedwithagingbasedonmicroarraydataofadipocytesfrommice
AT yuweigang identificationofpotentialkeylncrnasandgenesassociatedwithagingbasedonmicroarraydataofadipocytesfrommice