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Model fit versus biological relevance: Evaluating photosynthesis-temperature models for three tropical seagrass species

When several models can describe a biological process, the equation that best fits the data is typically considered the best. However, models are most useful when they also possess biologically-meaningful parameters. In particular, model parameters should be stable, physically interpretable, and tra...

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Autores principales: Adams, Matthew P., Collier, Catherine J., Uthicke, Sven, Ow, Yan X., Langlois, Lucas, O’Brien, Katherine R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5209739/
https://www.ncbi.nlm.nih.gov/pubmed/28051123
http://dx.doi.org/10.1038/srep39930
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author Adams, Matthew P.
Collier, Catherine J.
Uthicke, Sven
Ow, Yan X.
Langlois, Lucas
O’Brien, Katherine R.
author_facet Adams, Matthew P.
Collier, Catherine J.
Uthicke, Sven
Ow, Yan X.
Langlois, Lucas
O’Brien, Katherine R.
author_sort Adams, Matthew P.
collection PubMed
description When several models can describe a biological process, the equation that best fits the data is typically considered the best. However, models are most useful when they also possess biologically-meaningful parameters. In particular, model parameters should be stable, physically interpretable, and transferable to other contexts, e.g. for direct indication of system state, or usage in other model types. As an example of implementing these recommended requirements for model parameters, we evaluated twelve published empirical models for temperature-dependent tropical seagrass photosynthesis, based on two criteria: (1) goodness of fit, and (2) how easily biologically-meaningful parameters can be obtained. All models were formulated in terms of parameters characterising the thermal optimum (T(opt)) for maximum photosynthetic rate (P(max)). These parameters indicate the upper thermal limits of seagrass photosynthetic capacity, and hence can be used to assess the vulnerability of seagrass to temperature change. Our study exemplifies an approach to model selection which optimises the usefulness of empirical models for both modellers and ecologists alike.
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spelling pubmed-52097392017-01-05 Model fit versus biological relevance: Evaluating photosynthesis-temperature models for three tropical seagrass species Adams, Matthew P. Collier, Catherine J. Uthicke, Sven Ow, Yan X. Langlois, Lucas O’Brien, Katherine R. Sci Rep Article When several models can describe a biological process, the equation that best fits the data is typically considered the best. However, models are most useful when they also possess biologically-meaningful parameters. In particular, model parameters should be stable, physically interpretable, and transferable to other contexts, e.g. for direct indication of system state, or usage in other model types. As an example of implementing these recommended requirements for model parameters, we evaluated twelve published empirical models for temperature-dependent tropical seagrass photosynthesis, based on two criteria: (1) goodness of fit, and (2) how easily biologically-meaningful parameters can be obtained. All models were formulated in terms of parameters characterising the thermal optimum (T(opt)) for maximum photosynthetic rate (P(max)). These parameters indicate the upper thermal limits of seagrass photosynthetic capacity, and hence can be used to assess the vulnerability of seagrass to temperature change. Our study exemplifies an approach to model selection which optimises the usefulness of empirical models for both modellers and ecologists alike. Nature Publishing Group 2017-01-04 /pmc/articles/PMC5209739/ /pubmed/28051123 http://dx.doi.org/10.1038/srep39930 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Adams, Matthew P.
Collier, Catherine J.
Uthicke, Sven
Ow, Yan X.
Langlois, Lucas
O’Brien, Katherine R.
Model fit versus biological relevance: Evaluating photosynthesis-temperature models for three tropical seagrass species
title Model fit versus biological relevance: Evaluating photosynthesis-temperature models for three tropical seagrass species
title_full Model fit versus biological relevance: Evaluating photosynthesis-temperature models for three tropical seagrass species
title_fullStr Model fit versus biological relevance: Evaluating photosynthesis-temperature models for three tropical seagrass species
title_full_unstemmed Model fit versus biological relevance: Evaluating photosynthesis-temperature models for three tropical seagrass species
title_short Model fit versus biological relevance: Evaluating photosynthesis-temperature models for three tropical seagrass species
title_sort model fit versus biological relevance: evaluating photosynthesis-temperature models for three tropical seagrass species
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5209739/
https://www.ncbi.nlm.nih.gov/pubmed/28051123
http://dx.doi.org/10.1038/srep39930
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