Cargando…

PERGOLA: fast and deterministic linkage mapping of polyploids

BACKGROUND: A large share of agriculturally and horticulturally important plant species are polyploid. Linkage maps are used to locate associations between genes and traits by breeders and geneticists. Linkage map creation for polyploid species is not supported by standard tools. We want to overcome...

Descripción completa

Detalles Bibliográficos
Autores principales:	Grandke, Fabian, Ranganathan, Soumya, van Bers, Nikkie, de Haan, Jorn R., Metzler, Dirk
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2017
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210299/ https://www.ncbi.nlm.nih.gov/pubmed/28049428 http://dx.doi.org/10.1186/s12859-016-1416-8

Ejemplares similares

Advantages of continuous genotype values over genotype classes for GWAS in higher polyploids: a comparative study in hexaploid chrysanthemum
por: Grandke, Fabian, et al.
Publicado: (2016)

Pergola: Boosting Visualization and Analysis of Longitudinal Data by Unlocking Genomic Analysis Tools
por: Espinosa-Carrasco, Jose, et al.
Publicado: (2018)

Optimization of the Mainzelliste software for fast privacy-preserving record linkage
por: Rohde, Florens, et al.
Publicado: (2021)

Effectiveness of biomechanically stable pergola-like additively manufactured scaffold for extraskeletal vertical bone augmentation
por: Yang, Wei, et al.
Publicado: (2023)

Linkage disequilibrium interval mapping of quantitative trait loci
por: Boitard, Simon, et al.
Publicado: (2006)

Using probabilistic genotypes in linkage analysis of polyploids
por: Liao, Yanlin, et al.
Publicado: (2021)

Accuracy of probabilistic and deterministic record linkage: the case of tuberculosis
por: de Oliveira, Gisele Pinto, et al.
Publicado: (2016)

LD-Spline: Mapping SNPs on genotyping platforms to genomic regions using patterns of linkage disequilibrium
por: Bush, William S, et al.
Publicado: (2009)

Influence of genotyping error in linkage mapping for complex traits – an analytic study
por: Lebrec, Jérémie JP, et al.
Publicado: (2008)

polymapR—linkage analysis and genetic map construction from F(1) populations of outcrossing polyploids
por: Bourke, Peter M, et al.
Publicado: (2018)

polymapR—linkage analysis and genetic map construction from F(1) populations of outcrossing polyploids
por: Bourke, Peter M, et al.
Publicado: (2019)

Pergola-web: a web server for the visualization and analysis of longitudinal behavioral data using repurposed genomics tools and standards
por: Espinosa-Carrasco, Jose, et al.
Publicado: (2019)

Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat
por: Trick, Martin, et al.
Publicado: (2012)

Sequencing-based variant detection in the polyploid crop oilseed rape
por: Wells, Rachel, et al.
Publicado: (2013)

Hap10: reconstructing accurate and long polyploid haplotypes using linked reads
por: Majidian, Sina, et al.
Publicado: (2020)

Genotyping of polyploid plants using quantitative PCR: application in the breeding of white-fleshed triploid loquats (Eriobotrya japonica)
por: Wang, Haiyan, et al.
Publicado: (2021)

Constructing stochastic models from deterministic process equations by propensity adjustment
por: Wu, Jialiang, et al.
Publicado: (2011)

Genome-wide Two-marker linkage disequilibrium mapping of quantitative trait loci
por: Yang, Jie, et al.
Publicado: (2014)

SDhaP: haplotype assembly for diploids and polyploids via semi-definite programming
por: Das, Shreepriya, et al.
Publicado: (2015)

PolyHaplotyper: haplotyping in polyploids based on bi-allelic marker dosage data
por: Voorrips, Roeland E., et al.
Publicado: (2022)

HANDS: a tool for genome-wide discovery of subgenome-specific base-identity in polyploids
por: Mithani, Aziz, et al.
Publicado: (2013)

UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study
por: Qi, Peng, et al.
Publicado: (2018)

Multiallelic models for QTL mapping in diverse polyploid populations
por: Thérèse Navarro, Alejandro, et al.
Publicado: (2022)

PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution
por: Gordon, Sean P., et al.
Publicado: (2019)

Genome-wide SNP identification by high-throughput sequencing and selective mapping allows sequence assembly positioning using a framework genetic linkage map
por: Celton, Jean-Marc, et al.
Publicado: (2010)

A quantitative linkage score for an association study following a linkage analysis
por: Wang, Tao, et al.
Publicado: (2006)

Sequence-Based Mapping of the Polyploid Wheat Genome
por: Saintenac, Cyrille, et al.
Publicado: (2013)

Superdiffusive limits for deterministic fast–slow dynamical systems
por: Chevyrev, Ilya, et al.
Publicado: (2020)

A next-generation sequencing method for overcoming the multiple gene copy problem in polyploid phylogenetics, applied to Poa grasses
por: Griffin, Philippa C, et al.
Publicado: (2011)

Maximum linkage space-time permutation scan statistics for disease outbreak detection
por: Costa, Marcelo A, et al.
Publicado: (2014)

Assembly of the LongSHOT cohort: public record linkage on a grand scale
por: Zhang, Yifan, et al.
Publicado: (2020)

Modeling methylation dynamics with simultaneous changes in CpG islands
por: Grosser, Konrad, et al.
Publicado: (2020)

Fast inexact mapping using advanced tree exploration on backward search methods
por: Salavert, José, et al.
Publicado: (2015)

Bayesian estimates of linkage disequilibrium
por: Sebastiani, Paola, et al.
Publicado: (2007)

Lessons in Linkage: combining administrative data using deterministic linkage for surveillance of sports and recreation injuries in Florida, United States
por: Baker, Charlotte, et al.
Publicado: (2022)

Network Analysis of Circular Permutations in Multidomain Proteins Reveals Functional Linkages for Uncharacterized Proteins
por: Adjeroh, Donald, et al.
Publicado: (2015)

PolyMarker: A fast polyploid primer design pipeline
por: Ramirez-Gonzalez, Ricardo H., et al.
Publicado: (2015)

Ranbow: A fast and accurate method for polyploid haplotype reconstruction
por: Moeinzadeh, M-Hossein, et al.
Publicado: (2020)

Alcohol mixed with energy drinks: methodology and design of the Utrecht Student Survey
por: de Haan, Lydia, et al.
Publicado: (2012)

Probabilistic linking to enhance deterministic algorithms and reduce linkage errors in hospital administrative data
por: Hagger-Johnson, Gareth, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_gj2tur8pnkru4mos0r1u2qgho1