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The RCSB protein data bank: integrative view of protein, gene and 3D structural information
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB, http://rcsb.org), the US data center for the global PDB archive, makes PDB data freely available to all users, from structural biologists to computational biologists and beyond. New tools and resources have been ad...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210513/ https://www.ncbi.nlm.nih.gov/pubmed/27794042 http://dx.doi.org/10.1093/nar/gkw1000 |
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author | Rose, Peter W. Prlić, Andreas Altunkaya, Ali Bi, Chunxiao Bradley, Anthony R. Christie, Cole H. Costanzo, Luigi Di Duarte, Jose M. Dutta, Shuchismita Feng, Zukang Green, Rachel Kramer Goodsell, David S. Hudson, Brian Kalro, Tara Lowe, Robert Peisach, Ezra Randle, Christopher Rose, Alexander S. Shao, Chenghua Tao, Yi-Ping Valasatava, Yana Voigt, Maria Westbrook, John D. Woo, Jesse Yang, Huangwang Young, Jasmine Y. Zardecki, Christine Berman, Helen M. Burley, Stephen K. |
author_facet | Rose, Peter W. Prlić, Andreas Altunkaya, Ali Bi, Chunxiao Bradley, Anthony R. Christie, Cole H. Costanzo, Luigi Di Duarte, Jose M. Dutta, Shuchismita Feng, Zukang Green, Rachel Kramer Goodsell, David S. Hudson, Brian Kalro, Tara Lowe, Robert Peisach, Ezra Randle, Christopher Rose, Alexander S. Shao, Chenghua Tao, Yi-Ping Valasatava, Yana Voigt, Maria Westbrook, John D. Woo, Jesse Yang, Huangwang Young, Jasmine Y. Zardecki, Christine Berman, Helen M. Burley, Stephen K. |
author_sort | Rose, Peter W. |
collection | PubMed |
description | The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB, http://rcsb.org), the US data center for the global PDB archive, makes PDB data freely available to all users, from structural biologists to computational biologists and beyond. New tools and resources have been added to the RCSB PDB web portal in support of a ‘Structural View of Biology.’ Recent developments have improved the User experience, including the high-speed NGL Viewer that provides 3D molecular visualization in any web browser, improved support for data file download and enhanced organization of website pages for query, reporting and individual structure exploration. Structure validation information is now visible for all archival entries. PDB data have been integrated with external biological resources, including chromosomal position within the human genome; protein modifications; and metabolic pathways. PDB-101 educational materials have been reorganized into a searchable website and expanded to include new features such as the Geis Digital Archive. |
format | Online Article Text |
id | pubmed-5210513 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-52105132017-01-05 The RCSB protein data bank: integrative view of protein, gene and 3D structural information Rose, Peter W. Prlić, Andreas Altunkaya, Ali Bi, Chunxiao Bradley, Anthony R. Christie, Cole H. Costanzo, Luigi Di Duarte, Jose M. Dutta, Shuchismita Feng, Zukang Green, Rachel Kramer Goodsell, David S. Hudson, Brian Kalro, Tara Lowe, Robert Peisach, Ezra Randle, Christopher Rose, Alexander S. Shao, Chenghua Tao, Yi-Ping Valasatava, Yana Voigt, Maria Westbrook, John D. Woo, Jesse Yang, Huangwang Young, Jasmine Y. Zardecki, Christine Berman, Helen M. Burley, Stephen K. Nucleic Acids Res Database Issue The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB, http://rcsb.org), the US data center for the global PDB archive, makes PDB data freely available to all users, from structural biologists to computational biologists and beyond. New tools and resources have been added to the RCSB PDB web portal in support of a ‘Structural View of Biology.’ Recent developments have improved the User experience, including the high-speed NGL Viewer that provides 3D molecular visualization in any web browser, improved support for data file download and enhanced organization of website pages for query, reporting and individual structure exploration. Structure validation information is now visible for all archival entries. PDB data have been integrated with external biological resources, including chromosomal position within the human genome; protein modifications; and metabolic pathways. PDB-101 educational materials have been reorganized into a searchable website and expanded to include new features such as the Geis Digital Archive. Oxford University Press 2017-01-04 2016-10-27 /pmc/articles/PMC5210513/ /pubmed/27794042 http://dx.doi.org/10.1093/nar/gkw1000 Text en © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Rose, Peter W. Prlić, Andreas Altunkaya, Ali Bi, Chunxiao Bradley, Anthony R. Christie, Cole H. Costanzo, Luigi Di Duarte, Jose M. Dutta, Shuchismita Feng, Zukang Green, Rachel Kramer Goodsell, David S. Hudson, Brian Kalro, Tara Lowe, Robert Peisach, Ezra Randle, Christopher Rose, Alexander S. Shao, Chenghua Tao, Yi-Ping Valasatava, Yana Voigt, Maria Westbrook, John D. Woo, Jesse Yang, Huangwang Young, Jasmine Y. Zardecki, Christine Berman, Helen M. Burley, Stephen K. The RCSB protein data bank: integrative view of protein, gene and 3D structural information |
title | The RCSB protein data bank: integrative view of protein, gene and 3D structural information |
title_full | The RCSB protein data bank: integrative view of protein, gene and 3D structural information |
title_fullStr | The RCSB protein data bank: integrative view of protein, gene and 3D structural information |
title_full_unstemmed | The RCSB protein data bank: integrative view of protein, gene and 3D structural information |
title_short | The RCSB protein data bank: integrative view of protein, gene and 3D structural information |
title_sort | rcsb protein data bank: integrative view of protein, gene and 3d structural information |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210513/ https://www.ncbi.nlm.nih.gov/pubmed/27794042 http://dx.doi.org/10.1093/nar/gkw1000 |
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