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Virus Variation Resource – improved response to emergent viral outbreaks

The Virus Variation Resource is a value-added viral sequence data resource hosted by the National Center for Biotechnology Information. The resource is located at http://www.ncbi.nlm.nih.gov/genome/viruses/variation/ and includes modules for seven viral groups: influenza virus, Dengue virus, West Ni...

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Autores principales: Hatcher, Eneida L., Zhdanov, Sergey A., Bao, Yiming, Blinkova, Olga, Nawrocki, Eric P., Ostapchuck, Yuri, Schäffer, Alejandro A., Brister, J. Rodney
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210549/
https://www.ncbi.nlm.nih.gov/pubmed/27899678
http://dx.doi.org/10.1093/nar/gkw1065
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author Hatcher, Eneida L.
Zhdanov, Sergey A.
Bao, Yiming
Blinkova, Olga
Nawrocki, Eric P.
Ostapchuck, Yuri
Schäffer, Alejandro A.
Brister, J. Rodney
author_facet Hatcher, Eneida L.
Zhdanov, Sergey A.
Bao, Yiming
Blinkova, Olga
Nawrocki, Eric P.
Ostapchuck, Yuri
Schäffer, Alejandro A.
Brister, J. Rodney
author_sort Hatcher, Eneida L.
collection PubMed
description The Virus Variation Resource is a value-added viral sequence data resource hosted by the National Center for Biotechnology Information. The resource is located at http://www.ncbi.nlm.nih.gov/genome/viruses/variation/ and includes modules for seven viral groups: influenza virus, Dengue virus, West Nile virus, Ebolavirus, MERS coronavirus, Rotavirus A and Zika virus. Each module is supported by pipelines that scan newly released GenBank records, annotate genes and proteins and parse sample descriptors and then map them to controlled vocabulary. These processes in turn support a purpose-built search interface where users can select sequences based on standardized gene, protein and metadata terms. Once sequences are selected, a suite of tools for downloading data, multi-sequence alignment and tree building supports a variety of user directed activities. This manuscript describes a series of features and functionalities recently added to the Virus Variation Resource.
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spelling pubmed-52105492017-01-05 Virus Variation Resource – improved response to emergent viral outbreaks Hatcher, Eneida L. Zhdanov, Sergey A. Bao, Yiming Blinkova, Olga Nawrocki, Eric P. Ostapchuck, Yuri Schäffer, Alejandro A. Brister, J. Rodney Nucleic Acids Res Database Issue The Virus Variation Resource is a value-added viral sequence data resource hosted by the National Center for Biotechnology Information. The resource is located at http://www.ncbi.nlm.nih.gov/genome/viruses/variation/ and includes modules for seven viral groups: influenza virus, Dengue virus, West Nile virus, Ebolavirus, MERS coronavirus, Rotavirus A and Zika virus. Each module is supported by pipelines that scan newly released GenBank records, annotate genes and proteins and parse sample descriptors and then map them to controlled vocabulary. These processes in turn support a purpose-built search interface where users can select sequences based on standardized gene, protein and metadata terms. Once sequences are selected, a suite of tools for downloading data, multi-sequence alignment and tree building supports a variety of user directed activities. This manuscript describes a series of features and functionalities recently added to the Virus Variation Resource. Oxford University Press 2017-01-04 2016-11-28 /pmc/articles/PMC5210549/ /pubmed/27899678 http://dx.doi.org/10.1093/nar/gkw1065 Text en Published by Oxford University Press on behalf of Nucleic Acids Research 2016. This work is written by (a) US Government employee(s) and is in the public domain in the US.
spellingShingle Database Issue
Hatcher, Eneida L.
Zhdanov, Sergey A.
Bao, Yiming
Blinkova, Olga
Nawrocki, Eric P.
Ostapchuck, Yuri
Schäffer, Alejandro A.
Brister, J. Rodney
Virus Variation Resource – improved response to emergent viral outbreaks
title Virus Variation Resource – improved response to emergent viral outbreaks
title_full Virus Variation Resource – improved response to emergent viral outbreaks
title_fullStr Virus Variation Resource – improved response to emergent viral outbreaks
title_full_unstemmed Virus Variation Resource – improved response to emergent viral outbreaks
title_short Virus Variation Resource – improved response to emergent viral outbreaks
title_sort virus variation resource – improved response to emergent viral outbreaks
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210549/
https://www.ncbi.nlm.nih.gov/pubmed/27899678
http://dx.doi.org/10.1093/nar/gkw1065
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