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Pharos: Collating protein information to shed light on the druggable genome

The ‘druggable genome’ encompasses several protein families, but only a subset of targets within them have attracted significant research attention and thus have information about them publicly available. The Illuminating the Druggable Genome (IDG) program was initiated in 2014, has the goal of deve...

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Autores principales: Nguyen, Dac-Trung, Mathias, Stephen, Bologa, Cristian, Brunak, Soren, Fernandez, Nicolas, Gaulton, Anna, Hersey, Anne, Holmes, Jayme, Jensen, Lars Juhl, Karlsson, Anneli, Liu, Guixia, Ma'ayan, Avi, Mandava, Geetha, Mani, Subramani, Mehta, Saurabh, Overington, John, Patel, Juhee, Rouillard, Andrew D., Schürer, Stephan, Sheils, Timothy, Simeonov, Anton, Sklar, Larry A., Southall, Noel, Ursu, Oleg, Vidovic, Dusica, Waller, Anna, Yang, Jeremy, Jadhav, Ajit, Oprea, Tudor I., Guha, Rajarshi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210555/
https://www.ncbi.nlm.nih.gov/pubmed/27903890
http://dx.doi.org/10.1093/nar/gkw1072
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author Nguyen, Dac-Trung
Mathias, Stephen
Bologa, Cristian
Brunak, Soren
Fernandez, Nicolas
Gaulton, Anna
Hersey, Anne
Holmes, Jayme
Jensen, Lars Juhl
Karlsson, Anneli
Liu, Guixia
Ma'ayan, Avi
Mandava, Geetha
Mani, Subramani
Mehta, Saurabh
Overington, John
Patel, Juhee
Rouillard, Andrew D.
Schürer, Stephan
Sheils, Timothy
Simeonov, Anton
Sklar, Larry A.
Southall, Noel
Ursu, Oleg
Vidovic, Dusica
Waller, Anna
Yang, Jeremy
Jadhav, Ajit
Oprea, Tudor I.
Guha, Rajarshi
author_facet Nguyen, Dac-Trung
Mathias, Stephen
Bologa, Cristian
Brunak, Soren
Fernandez, Nicolas
Gaulton, Anna
Hersey, Anne
Holmes, Jayme
Jensen, Lars Juhl
Karlsson, Anneli
Liu, Guixia
Ma'ayan, Avi
Mandava, Geetha
Mani, Subramani
Mehta, Saurabh
Overington, John
Patel, Juhee
Rouillard, Andrew D.
Schürer, Stephan
Sheils, Timothy
Simeonov, Anton
Sklar, Larry A.
Southall, Noel
Ursu, Oleg
Vidovic, Dusica
Waller, Anna
Yang, Jeremy
Jadhav, Ajit
Oprea, Tudor I.
Guha, Rajarshi
author_sort Nguyen, Dac-Trung
collection PubMed
description The ‘druggable genome’ encompasses several protein families, but only a subset of targets within them have attracted significant research attention and thus have information about them publicly available. The Illuminating the Druggable Genome (IDG) program was initiated in 2014, has the goal of developing experimental techniques and a Knowledge Management Center (KMC) that would collect and organize information about protein targets from four families, representing the most common druggable targets with an emphasis on understudied proteins. Here, we describe two resources developed by the KMC: the Target Central Resource Database (TCRD) which collates many heterogeneous gene/protein datasets and Pharos (https://pharos.nih.gov), a multimodal web interface that presents the data from TCRD. We briefly describe the types and sources of data considered by the KMC and then highlight features of the Pharos interface designed to enable intuitive access to the IDG knowledgebase. The aim of Pharos is to encourage ‘serendipitous browsing’, whereby related, relevant information is made easily discoverable. We conclude by describing two use cases that highlight the utility of Pharos and TCRD.
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spelling pubmed-52105552017-01-05 Pharos: Collating protein information to shed light on the druggable genome Nguyen, Dac-Trung Mathias, Stephen Bologa, Cristian Brunak, Soren Fernandez, Nicolas Gaulton, Anna Hersey, Anne Holmes, Jayme Jensen, Lars Juhl Karlsson, Anneli Liu, Guixia Ma'ayan, Avi Mandava, Geetha Mani, Subramani Mehta, Saurabh Overington, John Patel, Juhee Rouillard, Andrew D. Schürer, Stephan Sheils, Timothy Simeonov, Anton Sklar, Larry A. Southall, Noel Ursu, Oleg Vidovic, Dusica Waller, Anna Yang, Jeremy Jadhav, Ajit Oprea, Tudor I. Guha, Rajarshi Nucleic Acids Res Database Issue The ‘druggable genome’ encompasses several protein families, but only a subset of targets within them have attracted significant research attention and thus have information about them publicly available. The Illuminating the Druggable Genome (IDG) program was initiated in 2014, has the goal of developing experimental techniques and a Knowledge Management Center (KMC) that would collect and organize information about protein targets from four families, representing the most common druggable targets with an emphasis on understudied proteins. Here, we describe two resources developed by the KMC: the Target Central Resource Database (TCRD) which collates many heterogeneous gene/protein datasets and Pharos (https://pharos.nih.gov), a multimodal web interface that presents the data from TCRD. We briefly describe the types and sources of data considered by the KMC and then highlight features of the Pharos interface designed to enable intuitive access to the IDG knowledgebase. The aim of Pharos is to encourage ‘serendipitous browsing’, whereby related, relevant information is made easily discoverable. We conclude by describing two use cases that highlight the utility of Pharos and TCRD. Oxford University Press 2017-01-04 2016-11-28 /pmc/articles/PMC5210555/ /pubmed/27903890 http://dx.doi.org/10.1093/nar/gkw1072 Text en Published by Oxford University Press on behalf of Nucleic Acids Research 2016. This work is written by (a) US Government employee(s) and is in the public domain in the US.
spellingShingle Database Issue
Nguyen, Dac-Trung
Mathias, Stephen
Bologa, Cristian
Brunak, Soren
Fernandez, Nicolas
Gaulton, Anna
Hersey, Anne
Holmes, Jayme
Jensen, Lars Juhl
Karlsson, Anneli
Liu, Guixia
Ma'ayan, Avi
Mandava, Geetha
Mani, Subramani
Mehta, Saurabh
Overington, John
Patel, Juhee
Rouillard, Andrew D.
Schürer, Stephan
Sheils, Timothy
Simeonov, Anton
Sklar, Larry A.
Southall, Noel
Ursu, Oleg
Vidovic, Dusica
Waller, Anna
Yang, Jeremy
Jadhav, Ajit
Oprea, Tudor I.
Guha, Rajarshi
Pharos: Collating protein information to shed light on the druggable genome
title Pharos: Collating protein information to shed light on the druggable genome
title_full Pharos: Collating protein information to shed light on the druggable genome
title_fullStr Pharos: Collating protein information to shed light on the druggable genome
title_full_unstemmed Pharos: Collating protein information to shed light on the druggable genome
title_short Pharos: Collating protein information to shed light on the druggable genome
title_sort pharos: collating protein information to shed light on the druggable genome
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210555/
https://www.ncbi.nlm.nih.gov/pubmed/27903890
http://dx.doi.org/10.1093/nar/gkw1072
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