Cargando…

The ChEMBL database in 2017

ChEMBL is an open large-scale bioactivity database (https://www.ebi.ac.uk/chembl), previously described in the 2012 and 2014 Nucleic Acids Research Database Issues. Since then, alongside the continued extraction of data from the medicinal chemistry literature, new sources of bioactivity data have al...

Descripción completa

Detalles Bibliográficos
Autores principales: Gaulton, Anna, Hersey, Anne, Nowotka, Michał, Bento, A. Patrícia, Chambers, Jon, Mendez, David, Mutowo, Prudence, Atkinson, Francis, Bellis, Louisa J., Cibrián-Uhalte, Elena, Davies, Mark, Dedman, Nathan, Karlsson, Anneli, Magariños, María Paula, Overington, John P., Papadatos, George, Smit, Ines, Leach, Andrew R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210557/
https://www.ncbi.nlm.nih.gov/pubmed/27899562
http://dx.doi.org/10.1093/nar/gkw1074
_version_ 1782490907313963008
author Gaulton, Anna
Hersey, Anne
Nowotka, Michał
Bento, A. Patrícia
Chambers, Jon
Mendez, David
Mutowo, Prudence
Atkinson, Francis
Bellis, Louisa J.
Cibrián-Uhalte, Elena
Davies, Mark
Dedman, Nathan
Karlsson, Anneli
Magariños, María Paula
Overington, John P.
Papadatos, George
Smit, Ines
Leach, Andrew R.
author_facet Gaulton, Anna
Hersey, Anne
Nowotka, Michał
Bento, A. Patrícia
Chambers, Jon
Mendez, David
Mutowo, Prudence
Atkinson, Francis
Bellis, Louisa J.
Cibrián-Uhalte, Elena
Davies, Mark
Dedman, Nathan
Karlsson, Anneli
Magariños, María Paula
Overington, John P.
Papadatos, George
Smit, Ines
Leach, Andrew R.
author_sort Gaulton, Anna
collection PubMed
description ChEMBL is an open large-scale bioactivity database (https://www.ebi.ac.uk/chembl), previously described in the 2012 and 2014 Nucleic Acids Research Database Issues. Since then, alongside the continued extraction of data from the medicinal chemistry literature, new sources of bioactivity data have also been added to the database. These include: deposited data sets from neglected disease screening; crop protection data; drug metabolism and disposition data and bioactivity data from patents. A number of improvements and new features have also been incorporated. These include the annotation of assays and targets using ontologies, the inclusion of targets and indications for clinical candidates, addition of metabolic pathways for drugs and calculation of structural alerts. The ChEMBL data can be accessed via a web-interface, RDF distribution, data downloads and RESTful web-services.
format Online
Article
Text
id pubmed-5210557
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-52105572017-01-05 The ChEMBL database in 2017 Gaulton, Anna Hersey, Anne Nowotka, Michał Bento, A. Patrícia Chambers, Jon Mendez, David Mutowo, Prudence Atkinson, Francis Bellis, Louisa J. Cibrián-Uhalte, Elena Davies, Mark Dedman, Nathan Karlsson, Anneli Magariños, María Paula Overington, John P. Papadatos, George Smit, Ines Leach, Andrew R. Nucleic Acids Res Database Issue ChEMBL is an open large-scale bioactivity database (https://www.ebi.ac.uk/chembl), previously described in the 2012 and 2014 Nucleic Acids Research Database Issues. Since then, alongside the continued extraction of data from the medicinal chemistry literature, new sources of bioactivity data have also been added to the database. These include: deposited data sets from neglected disease screening; crop protection data; drug metabolism and disposition data and bioactivity data from patents. A number of improvements and new features have also been incorporated. These include the annotation of assays and targets using ontologies, the inclusion of targets and indications for clinical candidates, addition of metabolic pathways for drugs and calculation of structural alerts. The ChEMBL data can be accessed via a web-interface, RDF distribution, data downloads and RESTful web-services. Oxford University Press 2017-01-04 2016-11-28 /pmc/articles/PMC5210557/ /pubmed/27899562 http://dx.doi.org/10.1093/nar/gkw1074 Text en © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Gaulton, Anna
Hersey, Anne
Nowotka, Michał
Bento, A. Patrícia
Chambers, Jon
Mendez, David
Mutowo, Prudence
Atkinson, Francis
Bellis, Louisa J.
Cibrián-Uhalte, Elena
Davies, Mark
Dedman, Nathan
Karlsson, Anneli
Magariños, María Paula
Overington, John P.
Papadatos, George
Smit, Ines
Leach, Andrew R.
The ChEMBL database in 2017
title The ChEMBL database in 2017
title_full The ChEMBL database in 2017
title_fullStr The ChEMBL database in 2017
title_full_unstemmed The ChEMBL database in 2017
title_short The ChEMBL database in 2017
title_sort chembl database in 2017
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210557/
https://www.ncbi.nlm.nih.gov/pubmed/27899562
http://dx.doi.org/10.1093/nar/gkw1074
work_keys_str_mv AT gaultonanna thechembldatabasein2017
AT herseyanne thechembldatabasein2017
AT nowotkamichał thechembldatabasein2017
AT bentoapatricia thechembldatabasein2017
AT chambersjon thechembldatabasein2017
AT mendezdavid thechembldatabasein2017
AT mutowoprudence thechembldatabasein2017
AT atkinsonfrancis thechembldatabasein2017
AT bellislouisaj thechembldatabasein2017
AT cibrianuhalteelena thechembldatabasein2017
AT daviesmark thechembldatabasein2017
AT dedmannathan thechembldatabasein2017
AT karlssonanneli thechembldatabasein2017
AT magarinosmariapaula thechembldatabasein2017
AT overingtonjohnp thechembldatabasein2017
AT papadatosgeorge thechembldatabasein2017
AT smitines thechembldatabasein2017
AT leachandrewr thechembldatabasein2017
AT gaultonanna chembldatabasein2017
AT herseyanne chembldatabasein2017
AT nowotkamichał chembldatabasein2017
AT bentoapatricia chembldatabasein2017
AT chambersjon chembldatabasein2017
AT mendezdavid chembldatabasein2017
AT mutowoprudence chembldatabasein2017
AT atkinsonfrancis chembldatabasein2017
AT bellislouisaj chembldatabasein2017
AT cibrianuhalteelena chembldatabasein2017
AT daviesmark chembldatabasein2017
AT dedmannathan chembldatabasein2017
AT karlssonanneli chembldatabasein2017
AT magarinosmariapaula chembldatabasein2017
AT overingtonjohnp chembldatabasein2017
AT papadatosgeorge chembldatabasein2017
AT smitines chembldatabasein2017
AT leachandrewr chembldatabasein2017