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The ChEMBL database in 2017
ChEMBL is an open large-scale bioactivity database (https://www.ebi.ac.uk/chembl), previously described in the 2012 and 2014 Nucleic Acids Research Database Issues. Since then, alongside the continued extraction of data from the medicinal chemistry literature, new sources of bioactivity data have al...
Autores principales: | , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210557/ https://www.ncbi.nlm.nih.gov/pubmed/27899562 http://dx.doi.org/10.1093/nar/gkw1074 |
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author | Gaulton, Anna Hersey, Anne Nowotka, Michał Bento, A. Patrícia Chambers, Jon Mendez, David Mutowo, Prudence Atkinson, Francis Bellis, Louisa J. Cibrián-Uhalte, Elena Davies, Mark Dedman, Nathan Karlsson, Anneli Magariños, María Paula Overington, John P. Papadatos, George Smit, Ines Leach, Andrew R. |
author_facet | Gaulton, Anna Hersey, Anne Nowotka, Michał Bento, A. Patrícia Chambers, Jon Mendez, David Mutowo, Prudence Atkinson, Francis Bellis, Louisa J. Cibrián-Uhalte, Elena Davies, Mark Dedman, Nathan Karlsson, Anneli Magariños, María Paula Overington, John P. Papadatos, George Smit, Ines Leach, Andrew R. |
author_sort | Gaulton, Anna |
collection | PubMed |
description | ChEMBL is an open large-scale bioactivity database (https://www.ebi.ac.uk/chembl), previously described in the 2012 and 2014 Nucleic Acids Research Database Issues. Since then, alongside the continued extraction of data from the medicinal chemistry literature, new sources of bioactivity data have also been added to the database. These include: deposited data sets from neglected disease screening; crop protection data; drug metabolism and disposition data and bioactivity data from patents. A number of improvements and new features have also been incorporated. These include the annotation of assays and targets using ontologies, the inclusion of targets and indications for clinical candidates, addition of metabolic pathways for drugs and calculation of structural alerts. The ChEMBL data can be accessed via a web-interface, RDF distribution, data downloads and RESTful web-services. |
format | Online Article Text |
id | pubmed-5210557 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-52105572017-01-05 The ChEMBL database in 2017 Gaulton, Anna Hersey, Anne Nowotka, Michał Bento, A. Patrícia Chambers, Jon Mendez, David Mutowo, Prudence Atkinson, Francis Bellis, Louisa J. Cibrián-Uhalte, Elena Davies, Mark Dedman, Nathan Karlsson, Anneli Magariños, María Paula Overington, John P. Papadatos, George Smit, Ines Leach, Andrew R. Nucleic Acids Res Database Issue ChEMBL is an open large-scale bioactivity database (https://www.ebi.ac.uk/chembl), previously described in the 2012 and 2014 Nucleic Acids Research Database Issues. Since then, alongside the continued extraction of data from the medicinal chemistry literature, new sources of bioactivity data have also been added to the database. These include: deposited data sets from neglected disease screening; crop protection data; drug metabolism and disposition data and bioactivity data from patents. A number of improvements and new features have also been incorporated. These include the annotation of assays and targets using ontologies, the inclusion of targets and indications for clinical candidates, addition of metabolic pathways for drugs and calculation of structural alerts. The ChEMBL data can be accessed via a web-interface, RDF distribution, data downloads and RESTful web-services. Oxford University Press 2017-01-04 2016-11-28 /pmc/articles/PMC5210557/ /pubmed/27899562 http://dx.doi.org/10.1093/nar/gkw1074 Text en © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Gaulton, Anna Hersey, Anne Nowotka, Michał Bento, A. Patrícia Chambers, Jon Mendez, David Mutowo, Prudence Atkinson, Francis Bellis, Louisa J. Cibrián-Uhalte, Elena Davies, Mark Dedman, Nathan Karlsson, Anneli Magariños, María Paula Overington, John P. Papadatos, George Smit, Ines Leach, Andrew R. The ChEMBL database in 2017 |
title | The ChEMBL database in 2017 |
title_full | The ChEMBL database in 2017 |
title_fullStr | The ChEMBL database in 2017 |
title_full_unstemmed | The ChEMBL database in 2017 |
title_short | The ChEMBL database in 2017 |
title_sort | chembl database in 2017 |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210557/ https://www.ncbi.nlm.nih.gov/pubmed/27899562 http://dx.doi.org/10.1093/nar/gkw1074 |
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