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jPOSTrepo: an international standard data repository for proteomes

Major advancements have recently been made in mass spectrometry-based proteomics, yielding an increasing number of datasets from various proteomics projects worldwide. In order to facilitate the sharing and reuse of promising datasets, it is important to construct appropriate, high-quality public da...

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Autores principales: Okuda, Shujiro, Watanabe, Yu, Moriya, Yuki, Kawano, Shin, Yamamoto, Tadashi, Matsumoto, Masaki, Takami, Tomoyo, Kobayashi, Daiki, Araki, Norie, Yoshizawa, Akiyasu C., Tabata, Tsuyoshi, Sugiyama, Naoyuki, Goto, Susumu, Ishihama, Yasushi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210561/
https://www.ncbi.nlm.nih.gov/pubmed/27899654
http://dx.doi.org/10.1093/nar/gkw1080
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author Okuda, Shujiro
Watanabe, Yu
Moriya, Yuki
Kawano, Shin
Yamamoto, Tadashi
Matsumoto, Masaki
Takami, Tomoyo
Kobayashi, Daiki
Araki, Norie
Yoshizawa, Akiyasu C.
Tabata, Tsuyoshi
Sugiyama, Naoyuki
Goto, Susumu
Ishihama, Yasushi
author_facet Okuda, Shujiro
Watanabe, Yu
Moriya, Yuki
Kawano, Shin
Yamamoto, Tadashi
Matsumoto, Masaki
Takami, Tomoyo
Kobayashi, Daiki
Araki, Norie
Yoshizawa, Akiyasu C.
Tabata, Tsuyoshi
Sugiyama, Naoyuki
Goto, Susumu
Ishihama, Yasushi
author_sort Okuda, Shujiro
collection PubMed
description Major advancements have recently been made in mass spectrometry-based proteomics, yielding an increasing number of datasets from various proteomics projects worldwide. In order to facilitate the sharing and reuse of promising datasets, it is important to construct appropriate, high-quality public data repositories. jPOSTrepo (https://repository.jpostdb.org/) has successfully implemented several unique features, including high-speed file uploading, flexible file management and easy-to-use interfaces. This repository has been launched as a public repository containing various proteomic datasets and is available for researchers worldwide. In addition, our repository has joined the ProteomeXchange consortium, which includes the most popular public repositories such as PRIDE in Europe for MS/MS datasets and PASSEL for SRM datasets in the USA. Later MassIVE was introduced in the USA and accepted into the ProteomeXchange, as was our repository in July 2016, providing important datasets from Asia/Oceania. Accordingly, this repository thus contributes to a global alliance to share and store all datasets from a wide variety of proteomics experiments. Thus, the repository is expected to become a major repository, particularly for data collected in the Asia/Oceania region.
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spelling pubmed-52105612017-01-05 jPOSTrepo: an international standard data repository for proteomes Okuda, Shujiro Watanabe, Yu Moriya, Yuki Kawano, Shin Yamamoto, Tadashi Matsumoto, Masaki Takami, Tomoyo Kobayashi, Daiki Araki, Norie Yoshizawa, Akiyasu C. Tabata, Tsuyoshi Sugiyama, Naoyuki Goto, Susumu Ishihama, Yasushi Nucleic Acids Res Database Issue Major advancements have recently been made in mass spectrometry-based proteomics, yielding an increasing number of datasets from various proteomics projects worldwide. In order to facilitate the sharing and reuse of promising datasets, it is important to construct appropriate, high-quality public data repositories. jPOSTrepo (https://repository.jpostdb.org/) has successfully implemented several unique features, including high-speed file uploading, flexible file management and easy-to-use interfaces. This repository has been launched as a public repository containing various proteomic datasets and is available for researchers worldwide. In addition, our repository has joined the ProteomeXchange consortium, which includes the most popular public repositories such as PRIDE in Europe for MS/MS datasets and PASSEL for SRM datasets in the USA. Later MassIVE was introduced in the USA and accepted into the ProteomeXchange, as was our repository in July 2016, providing important datasets from Asia/Oceania. Accordingly, this repository thus contributes to a global alliance to share and store all datasets from a wide variety of proteomics experiments. Thus, the repository is expected to become a major repository, particularly for data collected in the Asia/Oceania region. Oxford University Press 2017-01-04 2016-11-29 /pmc/articles/PMC5210561/ /pubmed/27899654 http://dx.doi.org/10.1093/nar/gkw1080 Text en © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Database Issue
Okuda, Shujiro
Watanabe, Yu
Moriya, Yuki
Kawano, Shin
Yamamoto, Tadashi
Matsumoto, Masaki
Takami, Tomoyo
Kobayashi, Daiki
Araki, Norie
Yoshizawa, Akiyasu C.
Tabata, Tsuyoshi
Sugiyama, Naoyuki
Goto, Susumu
Ishihama, Yasushi
jPOSTrepo: an international standard data repository for proteomes
title jPOSTrepo: an international standard data repository for proteomes
title_full jPOSTrepo: an international standard data repository for proteomes
title_fullStr jPOSTrepo: an international standard data repository for proteomes
title_full_unstemmed jPOSTrepo: an international standard data repository for proteomes
title_short jPOSTrepo: an international standard data repository for proteomes
title_sort jpostrepo: an international standard data repository for proteomes
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210561/
https://www.ncbi.nlm.nih.gov/pubmed/27899654
http://dx.doi.org/10.1093/nar/gkw1080
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