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InterPro in 2017—beyond protein family and domain annotations

InterPro (http://www.ebi.ac.uk/interpro/) is a freely available database used to classify protein sequences into families and to predict the presence of important domains and sites. InterProScan is the underlying software that allows both protein and nucleic acid sequences to be searched against Int...

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Autores principales: Finn, Robert D., Attwood, Teresa K., Babbitt, Patricia C., Bateman, Alex, Bork, Peer, Bridge, Alan J., Chang, Hsin-Yu, Dosztányi, Zsuzsanna, El-Gebali, Sara, Fraser, Matthew, Gough, Julian, Haft, David, Holliday, Gemma L., Huang, Hongzhan, Huang, Xiaosong, Letunic, Ivica, Lopez, Rodrigo, Lu, Shennan, Marchler-Bauer, Aron, Mi, Huaiyu, Mistry, Jaina, Natale, Darren A., Necci, Marco, Nuka, Gift, Orengo, Christine A., Park, Youngmi, Pesseat, Sebastien, Piovesan, Damiano, Potter, Simon C., Rawlings, Neil D., Redaschi, Nicole, Richardson, Lorna, Rivoire, Catherine, Sangrador-Vegas, Amaia, Sigrist, Christian, Sillitoe, Ian, Smithers, Ben, Squizzato, Silvano, Sutton, Granger, Thanki, Narmada, Thomas, Paul D, Tosatto, Silvio C. E., Wu, Cathy H., Xenarios, Ioannis, Yeh, Lai-Su, Young, Siew-Yit, Mitchell, Alex L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210578/
https://www.ncbi.nlm.nih.gov/pubmed/27899635
http://dx.doi.org/10.1093/nar/gkw1107
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author Finn, Robert D.
Attwood, Teresa K.
Babbitt, Patricia C.
Bateman, Alex
Bork, Peer
Bridge, Alan J.
Chang, Hsin-Yu
Dosztányi, Zsuzsanna
El-Gebali, Sara
Fraser, Matthew
Gough, Julian
Haft, David
Holliday, Gemma L.
Huang, Hongzhan
Huang, Xiaosong
Letunic, Ivica
Lopez, Rodrigo
Lu, Shennan
Marchler-Bauer, Aron
Mi, Huaiyu
Mistry, Jaina
Natale, Darren A.
Necci, Marco
Nuka, Gift
Orengo, Christine A.
Park, Youngmi
Pesseat, Sebastien
Piovesan, Damiano
Potter, Simon C.
Rawlings, Neil D.
Redaschi, Nicole
Richardson, Lorna
Rivoire, Catherine
Sangrador-Vegas, Amaia
Sigrist, Christian
Sillitoe, Ian
Smithers, Ben
Squizzato, Silvano
Sutton, Granger
Thanki, Narmada
Thomas, Paul D
Tosatto, Silvio C. E.
Wu, Cathy H.
Xenarios, Ioannis
Yeh, Lai-Su
Young, Siew-Yit
Mitchell, Alex L.
author_facet Finn, Robert D.
Attwood, Teresa K.
Babbitt, Patricia C.
Bateman, Alex
Bork, Peer
Bridge, Alan J.
Chang, Hsin-Yu
Dosztányi, Zsuzsanna
El-Gebali, Sara
Fraser, Matthew
Gough, Julian
Haft, David
Holliday, Gemma L.
Huang, Hongzhan
Huang, Xiaosong
Letunic, Ivica
Lopez, Rodrigo
Lu, Shennan
Marchler-Bauer, Aron
Mi, Huaiyu
Mistry, Jaina
Natale, Darren A.
Necci, Marco
Nuka, Gift
Orengo, Christine A.
Park, Youngmi
Pesseat, Sebastien
Piovesan, Damiano
Potter, Simon C.
Rawlings, Neil D.
Redaschi, Nicole
Richardson, Lorna
Rivoire, Catherine
Sangrador-Vegas, Amaia
Sigrist, Christian
Sillitoe, Ian
Smithers, Ben
Squizzato, Silvano
Sutton, Granger
Thanki, Narmada
Thomas, Paul D
Tosatto, Silvio C. E.
Wu, Cathy H.
Xenarios, Ioannis
Yeh, Lai-Su
Young, Siew-Yit
Mitchell, Alex L.
author_sort Finn, Robert D.
collection PubMed
description InterPro (http://www.ebi.ac.uk/interpro/) is a freely available database used to classify protein sequences into families and to predict the presence of important domains and sites. InterProScan is the underlying software that allows both protein and nucleic acid sequences to be searched against InterPro's predictive models, which are provided by its member databases. Here, we report recent developments with InterPro and its associated software, including the addition of two new databases (SFLD and CDD), and the functionality to include residue-level annotation and prediction of intrinsic disorder. These developments enrich the annotations provided by InterPro, increase the overall number of residues annotated and allow more specific functional inferences.
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spelling pubmed-52105782017-01-05 InterPro in 2017—beyond protein family and domain annotations Finn, Robert D. Attwood, Teresa K. Babbitt, Patricia C. Bateman, Alex Bork, Peer Bridge, Alan J. Chang, Hsin-Yu Dosztányi, Zsuzsanna El-Gebali, Sara Fraser, Matthew Gough, Julian Haft, David Holliday, Gemma L. Huang, Hongzhan Huang, Xiaosong Letunic, Ivica Lopez, Rodrigo Lu, Shennan Marchler-Bauer, Aron Mi, Huaiyu Mistry, Jaina Natale, Darren A. Necci, Marco Nuka, Gift Orengo, Christine A. Park, Youngmi Pesseat, Sebastien Piovesan, Damiano Potter, Simon C. Rawlings, Neil D. Redaschi, Nicole Richardson, Lorna Rivoire, Catherine Sangrador-Vegas, Amaia Sigrist, Christian Sillitoe, Ian Smithers, Ben Squizzato, Silvano Sutton, Granger Thanki, Narmada Thomas, Paul D Tosatto, Silvio C. E. Wu, Cathy H. Xenarios, Ioannis Yeh, Lai-Su Young, Siew-Yit Mitchell, Alex L. Nucleic Acids Res Database Issue InterPro (http://www.ebi.ac.uk/interpro/) is a freely available database used to classify protein sequences into families and to predict the presence of important domains and sites. InterProScan is the underlying software that allows both protein and nucleic acid sequences to be searched against InterPro's predictive models, which are provided by its member databases. Here, we report recent developments with InterPro and its associated software, including the addition of two new databases (SFLD and CDD), and the functionality to include residue-level annotation and prediction of intrinsic disorder. These developments enrich the annotations provided by InterPro, increase the overall number of residues annotated and allow more specific functional inferences. Oxford University Press 2017-01-04 2016-11-28 /pmc/articles/PMC5210578/ /pubmed/27899635 http://dx.doi.org/10.1093/nar/gkw1107 Text en © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Finn, Robert D.
Attwood, Teresa K.
Babbitt, Patricia C.
Bateman, Alex
Bork, Peer
Bridge, Alan J.
Chang, Hsin-Yu
Dosztányi, Zsuzsanna
El-Gebali, Sara
Fraser, Matthew
Gough, Julian
Haft, David
Holliday, Gemma L.
Huang, Hongzhan
Huang, Xiaosong
Letunic, Ivica
Lopez, Rodrigo
Lu, Shennan
Marchler-Bauer, Aron
Mi, Huaiyu
Mistry, Jaina
Natale, Darren A.
Necci, Marco
Nuka, Gift
Orengo, Christine A.
Park, Youngmi
Pesseat, Sebastien
Piovesan, Damiano
Potter, Simon C.
Rawlings, Neil D.
Redaschi, Nicole
Richardson, Lorna
Rivoire, Catherine
Sangrador-Vegas, Amaia
Sigrist, Christian
Sillitoe, Ian
Smithers, Ben
Squizzato, Silvano
Sutton, Granger
Thanki, Narmada
Thomas, Paul D
Tosatto, Silvio C. E.
Wu, Cathy H.
Xenarios, Ioannis
Yeh, Lai-Su
Young, Siew-Yit
Mitchell, Alex L.
InterPro in 2017—beyond protein family and domain annotations
title InterPro in 2017—beyond protein family and domain annotations
title_full InterPro in 2017—beyond protein family and domain annotations
title_fullStr InterPro in 2017—beyond protein family and domain annotations
title_full_unstemmed InterPro in 2017—beyond protein family and domain annotations
title_short InterPro in 2017—beyond protein family and domain annotations
title_sort interpro in 2017—beyond protein family and domain annotations
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210578/
https://www.ncbi.nlm.nih.gov/pubmed/27899635
http://dx.doi.org/10.1093/nar/gkw1107
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