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The dbGaP data browser: a new tool for browsing dbGaP controlled-access genomic data
The database of Genotypes and Phenotypes (dbGaP) Data Browser (https://www.ncbi.nlm.nih.gov/gap/ddb/) was developed in response to requests from the scientific community for a resource that enable view-only access to summary-level information and individual-level genotype and sequence data associate...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210596/ https://www.ncbi.nlm.nih.gov/pubmed/27899644 http://dx.doi.org/10.1093/nar/gkw1139 |
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author | Wong, Kira M. Langlais, Kristofor Tobias, Geoffrey S. Fletcher-Hoppe, Colette Krasnewich, Donna Leeds, Hilary S. Rodriguez, Laura Lyman Godynskiy, Georgy Schneider, Valerie A. Ramos, Erin M. Sherry, Stephen T. |
author_facet | Wong, Kira M. Langlais, Kristofor Tobias, Geoffrey S. Fletcher-Hoppe, Colette Krasnewich, Donna Leeds, Hilary S. Rodriguez, Laura Lyman Godynskiy, Georgy Schneider, Valerie A. Ramos, Erin M. Sherry, Stephen T. |
author_sort | Wong, Kira M. |
collection | PubMed |
description | The database of Genotypes and Phenotypes (dbGaP) Data Browser (https://www.ncbi.nlm.nih.gov/gap/ddb/) was developed in response to requests from the scientific community for a resource that enable view-only access to summary-level information and individual-level genotype and sequence data associated with phenotypic features maintained in the controlled-access tier of dbGaP. Until now, the dbGaP controlled-access environment required investigators to submit a data access request, wait for Data Access Committee review, download each data set and locally examine them for potentially relevant information. Existing unrestricted-access genomic data browsing resources (e.g. http://evs.gs.washington.edu/EVS/, http://exac.broadinstitute.org/) provide only summary statistics or aggregate allele frequencies. The dbGaP Data Browser serves as a third solution, providing researchers with view-only access to a compilation of individual-level data from general research use (GRU) studies through a simplified controlled-access process. The National Institutes of Health (NIH) will continue to improve the Browser in response to user feedback and believes that this tool may decrease unnecessary download requests, while still facilitating responsible genomic data-sharing. |
format | Online Article Text |
id | pubmed-5210596 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-52105962017-01-05 The dbGaP data browser: a new tool for browsing dbGaP controlled-access genomic data Wong, Kira M. Langlais, Kristofor Tobias, Geoffrey S. Fletcher-Hoppe, Colette Krasnewich, Donna Leeds, Hilary S. Rodriguez, Laura Lyman Godynskiy, Georgy Schneider, Valerie A. Ramos, Erin M. Sherry, Stephen T. Nucleic Acids Res Database Issue The database of Genotypes and Phenotypes (dbGaP) Data Browser (https://www.ncbi.nlm.nih.gov/gap/ddb/) was developed in response to requests from the scientific community for a resource that enable view-only access to summary-level information and individual-level genotype and sequence data associated with phenotypic features maintained in the controlled-access tier of dbGaP. Until now, the dbGaP controlled-access environment required investigators to submit a data access request, wait for Data Access Committee review, download each data set and locally examine them for potentially relevant information. Existing unrestricted-access genomic data browsing resources (e.g. http://evs.gs.washington.edu/EVS/, http://exac.broadinstitute.org/) provide only summary statistics or aggregate allele frequencies. The dbGaP Data Browser serves as a third solution, providing researchers with view-only access to a compilation of individual-level data from general research use (GRU) studies through a simplified controlled-access process. The National Institutes of Health (NIH) will continue to improve the Browser in response to user feedback and believes that this tool may decrease unnecessary download requests, while still facilitating responsible genomic data-sharing. Oxford University Press 2017-01-04 2016-11-28 /pmc/articles/PMC5210596/ /pubmed/27899644 http://dx.doi.org/10.1093/nar/gkw1139 Text en Published by Oxford University Press on behalf of Nucleic Acids Research 2016. This work is written by (a) US Government employee(s) and is in the public domain in the US. |
spellingShingle | Database Issue Wong, Kira M. Langlais, Kristofor Tobias, Geoffrey S. Fletcher-Hoppe, Colette Krasnewich, Donna Leeds, Hilary S. Rodriguez, Laura Lyman Godynskiy, Georgy Schneider, Valerie A. Ramos, Erin M. Sherry, Stephen T. The dbGaP data browser: a new tool for browsing dbGaP controlled-access genomic data |
title | The dbGaP data browser: a new tool for browsing dbGaP controlled-access genomic data |
title_full | The dbGaP data browser: a new tool for browsing dbGaP controlled-access genomic data |
title_fullStr | The dbGaP data browser: a new tool for browsing dbGaP controlled-access genomic data |
title_full_unstemmed | The dbGaP data browser: a new tool for browsing dbGaP controlled-access genomic data |
title_short | The dbGaP data browser: a new tool for browsing dbGaP controlled-access genomic data |
title_sort | dbgap data browser: a new tool for browsing dbgap controlled-access genomic data |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210596/ https://www.ncbi.nlm.nih.gov/pubmed/27899644 http://dx.doi.org/10.1093/nar/gkw1139 |
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