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The dbGaP data browser: a new tool for browsing dbGaP controlled-access genomic data

The database of Genotypes and Phenotypes (dbGaP) Data Browser (https://www.ncbi.nlm.nih.gov/gap/ddb/) was developed in response to requests from the scientific community for a resource that enable view-only access to summary-level information and individual-level genotype and sequence data associate...

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Autores principales: Wong, Kira M., Langlais, Kristofor, Tobias, Geoffrey S., Fletcher-Hoppe, Colette, Krasnewich, Donna, Leeds, Hilary S., Rodriguez, Laura Lyman, Godynskiy, Georgy, Schneider, Valerie A., Ramos, Erin M., Sherry, Stephen T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210596/
https://www.ncbi.nlm.nih.gov/pubmed/27899644
http://dx.doi.org/10.1093/nar/gkw1139
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author Wong, Kira M.
Langlais, Kristofor
Tobias, Geoffrey S.
Fletcher-Hoppe, Colette
Krasnewich, Donna
Leeds, Hilary S.
Rodriguez, Laura Lyman
Godynskiy, Georgy
Schneider, Valerie A.
Ramos, Erin M.
Sherry, Stephen T.
author_facet Wong, Kira M.
Langlais, Kristofor
Tobias, Geoffrey S.
Fletcher-Hoppe, Colette
Krasnewich, Donna
Leeds, Hilary S.
Rodriguez, Laura Lyman
Godynskiy, Georgy
Schneider, Valerie A.
Ramos, Erin M.
Sherry, Stephen T.
author_sort Wong, Kira M.
collection PubMed
description The database of Genotypes and Phenotypes (dbGaP) Data Browser (https://www.ncbi.nlm.nih.gov/gap/ddb/) was developed in response to requests from the scientific community for a resource that enable view-only access to summary-level information and individual-level genotype and sequence data associated with phenotypic features maintained in the controlled-access tier of dbGaP. Until now, the dbGaP controlled-access environment required investigators to submit a data access request, wait for Data Access Committee review, download each data set and locally examine them for potentially relevant information. Existing unrestricted-access genomic data browsing resources (e.g. http://evs.gs.washington.edu/EVS/, http://exac.broadinstitute.org/) provide only summary statistics or aggregate allele frequencies. The dbGaP Data Browser serves as a third solution, providing researchers with view-only access to a compilation of individual-level data from general research use (GRU) studies through a simplified controlled-access process. The National Institutes of Health (NIH) will continue to improve the Browser in response to user feedback and believes that this tool may decrease unnecessary download requests, while still facilitating responsible genomic data-sharing.
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spelling pubmed-52105962017-01-05 The dbGaP data browser: a new tool for browsing dbGaP controlled-access genomic data Wong, Kira M. Langlais, Kristofor Tobias, Geoffrey S. Fletcher-Hoppe, Colette Krasnewich, Donna Leeds, Hilary S. Rodriguez, Laura Lyman Godynskiy, Georgy Schneider, Valerie A. Ramos, Erin M. Sherry, Stephen T. Nucleic Acids Res Database Issue The database of Genotypes and Phenotypes (dbGaP) Data Browser (https://www.ncbi.nlm.nih.gov/gap/ddb/) was developed in response to requests from the scientific community for a resource that enable view-only access to summary-level information and individual-level genotype and sequence data associated with phenotypic features maintained in the controlled-access tier of dbGaP. Until now, the dbGaP controlled-access environment required investigators to submit a data access request, wait for Data Access Committee review, download each data set and locally examine them for potentially relevant information. Existing unrestricted-access genomic data browsing resources (e.g. http://evs.gs.washington.edu/EVS/, http://exac.broadinstitute.org/) provide only summary statistics or aggregate allele frequencies. The dbGaP Data Browser serves as a third solution, providing researchers with view-only access to a compilation of individual-level data from general research use (GRU) studies through a simplified controlled-access process. The National Institutes of Health (NIH) will continue to improve the Browser in response to user feedback and believes that this tool may decrease unnecessary download requests, while still facilitating responsible genomic data-sharing. Oxford University Press 2017-01-04 2016-11-28 /pmc/articles/PMC5210596/ /pubmed/27899644 http://dx.doi.org/10.1093/nar/gkw1139 Text en Published by Oxford University Press on behalf of Nucleic Acids Research 2016. This work is written by (a) US Government employee(s) and is in the public domain in the US.
spellingShingle Database Issue
Wong, Kira M.
Langlais, Kristofor
Tobias, Geoffrey S.
Fletcher-Hoppe, Colette
Krasnewich, Donna
Leeds, Hilary S.
Rodriguez, Laura Lyman
Godynskiy, Georgy
Schneider, Valerie A.
Ramos, Erin M.
Sherry, Stephen T.
The dbGaP data browser: a new tool for browsing dbGaP controlled-access genomic data
title The dbGaP data browser: a new tool for browsing dbGaP controlled-access genomic data
title_full The dbGaP data browser: a new tool for browsing dbGaP controlled-access genomic data
title_fullStr The dbGaP data browser: a new tool for browsing dbGaP controlled-access genomic data
title_full_unstemmed The dbGaP data browser: a new tool for browsing dbGaP controlled-access genomic data
title_short The dbGaP data browser: a new tool for browsing dbGaP controlled-access genomic data
title_sort dbgap data browser: a new tool for browsing dbgap controlled-access genomic data
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210596/
https://www.ncbi.nlm.nih.gov/pubmed/27899644
http://dx.doi.org/10.1093/nar/gkw1139
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