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PCDDB: new developments at the Protein Circular Dichroism Data Bank
The Protein Circular Dichroism Data Bank (PCDDB) has been in operation for more than 5 years as a public repository for archiving circular dichroism spectroscopic data and associated bioinformatics and experimental metadata. Since its inception, many improvements and new developments have been made...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210608/ https://www.ncbi.nlm.nih.gov/pubmed/27613420 http://dx.doi.org/10.1093/nar/gkw796 |
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author | Whitmore, Lee Miles, Andrew John Mavridis, Lazaros Janes, Robert W. Wallace, B.A. |
author_facet | Whitmore, Lee Miles, Andrew John Mavridis, Lazaros Janes, Robert W. Wallace, B.A. |
author_sort | Whitmore, Lee |
collection | PubMed |
description | The Protein Circular Dichroism Data Bank (PCDDB) has been in operation for more than 5 years as a public repository for archiving circular dichroism spectroscopic data and associated bioinformatics and experimental metadata. Since its inception, many improvements and new developments have been made in data display, searching algorithms, data formats, data content, auxillary information, and validation techniques, as well as, of course, an increase in the number of holdings. It provides a site (http://pcddb.cryst.bbk.ac.uk) for authors to deposit experimental data as well as detailed information on methods and calculations associated with published work. It also includes links for each entry to bioinformatics databases. The data are freely available to accessors either as single files or as complete data bank downloads. The PCDDB has found broad usage by the structural biology, bioinformatics, analytical and pharmaceutical communities, and has formed the basis for new software and methods developments. |
format | Online Article Text |
id | pubmed-5210608 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-52106082017-01-05 PCDDB: new developments at the Protein Circular Dichroism Data Bank Whitmore, Lee Miles, Andrew John Mavridis, Lazaros Janes, Robert W. Wallace, B.A. Nucleic Acids Res Database Issue The Protein Circular Dichroism Data Bank (PCDDB) has been in operation for more than 5 years as a public repository for archiving circular dichroism spectroscopic data and associated bioinformatics and experimental metadata. Since its inception, many improvements and new developments have been made in data display, searching algorithms, data formats, data content, auxillary information, and validation techniques, as well as, of course, an increase in the number of holdings. It provides a site (http://pcddb.cryst.bbk.ac.uk) for authors to deposit experimental data as well as detailed information on methods and calculations associated with published work. It also includes links for each entry to bioinformatics databases. The data are freely available to accessors either as single files or as complete data bank downloads. The PCDDB has found broad usage by the structural biology, bioinformatics, analytical and pharmaceutical communities, and has formed the basis for new software and methods developments. Oxford University Press 2017-01-04 2016-09-08 /pmc/articles/PMC5210608/ /pubmed/27613420 http://dx.doi.org/10.1093/nar/gkw796 Text en © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Database Issue Whitmore, Lee Miles, Andrew John Mavridis, Lazaros Janes, Robert W. Wallace, B.A. PCDDB: new developments at the Protein Circular Dichroism Data Bank |
title | PCDDB: new developments at the Protein Circular Dichroism Data Bank |
title_full | PCDDB: new developments at the Protein Circular Dichroism Data Bank |
title_fullStr | PCDDB: new developments at the Protein Circular Dichroism Data Bank |
title_full_unstemmed | PCDDB: new developments at the Protein Circular Dichroism Data Bank |
title_short | PCDDB: new developments at the Protein Circular Dichroism Data Bank |
title_sort | pcddb: new developments at the protein circular dichroism data bank |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210608/ https://www.ncbi.nlm.nih.gov/pubmed/27613420 http://dx.doi.org/10.1093/nar/gkw796 |
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