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CeNDR, the Caenorhabditis elegans natural diversity resource

Studies in model organisms have yielded considerable insights into the etiology of disease and our understanding of evolutionary processes. Caenorhabditis elegans is among the most powerful model organisms used to understand biology. However, C. elegans is not used as extensively as other model orga...

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Autores principales: Cook, Daniel E., Zdraljevic, Stefan, Roberts, Joshua P., Andersen, Erik C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210618/
https://www.ncbi.nlm.nih.gov/pubmed/27701074
http://dx.doi.org/10.1093/nar/gkw893
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author Cook, Daniel E.
Zdraljevic, Stefan
Roberts, Joshua P.
Andersen, Erik C.
author_facet Cook, Daniel E.
Zdraljevic, Stefan
Roberts, Joshua P.
Andersen, Erik C.
author_sort Cook, Daniel E.
collection PubMed
description Studies in model organisms have yielded considerable insights into the etiology of disease and our understanding of evolutionary processes. Caenorhabditis elegans is among the most powerful model organisms used to understand biology. However, C. elegans is not used as extensively as other model organisms to investigate how natural variation shapes traits, especially through the use of genome-wide association (GWA) analyses. Here, we introduce a new platform, the C. elegans Natural Diversity Resource (CeNDR) to enable statistical genetics and genomics studies of C. elegans and to connect the results to human disease. CeNDR provides the research community with wild strains, genome-wide sequence and variant data for every strain, and a GWA mapping portal for studying natural variation in C. elegans. Additionally, researchers outside of the C. elegans community can benefit from public mappings and integrated tools for comparative analyses. CeNDR uses several databases that are continually updated through the addition of new strains, sequencing data, and association mapping results. The CeNDR data are accessible through a freely available web portal located at http://www.elegansvariation.org or through an application programming interface.
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spelling pubmed-52106182017-01-05 CeNDR, the Caenorhabditis elegans natural diversity resource Cook, Daniel E. Zdraljevic, Stefan Roberts, Joshua P. Andersen, Erik C. Nucleic Acids Res Database Issue Studies in model organisms have yielded considerable insights into the etiology of disease and our understanding of evolutionary processes. Caenorhabditis elegans is among the most powerful model organisms used to understand biology. However, C. elegans is not used as extensively as other model organisms to investigate how natural variation shapes traits, especially through the use of genome-wide association (GWA) analyses. Here, we introduce a new platform, the C. elegans Natural Diversity Resource (CeNDR) to enable statistical genetics and genomics studies of C. elegans and to connect the results to human disease. CeNDR provides the research community with wild strains, genome-wide sequence and variant data for every strain, and a GWA mapping portal for studying natural variation in C. elegans. Additionally, researchers outside of the C. elegans community can benefit from public mappings and integrated tools for comparative analyses. CeNDR uses several databases that are continually updated through the addition of new strains, sequencing data, and association mapping results. The CeNDR data are accessible through a freely available web portal located at http://www.elegansvariation.org or through an application programming interface. Oxford University Press 2017-01-04 2016-10-03 /pmc/articles/PMC5210618/ /pubmed/27701074 http://dx.doi.org/10.1093/nar/gkw893 Text en © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Database Issue
Cook, Daniel E.
Zdraljevic, Stefan
Roberts, Joshua P.
Andersen, Erik C.
CeNDR, the Caenorhabditis elegans natural diversity resource
title CeNDR, the Caenorhabditis elegans natural diversity resource
title_full CeNDR, the Caenorhabditis elegans natural diversity resource
title_fullStr CeNDR, the Caenorhabditis elegans natural diversity resource
title_full_unstemmed CeNDR, the Caenorhabditis elegans natural diversity resource
title_short CeNDR, the Caenorhabditis elegans natural diversity resource
title_sort cendr, the caenorhabditis elegans natural diversity resource
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210618/
https://www.ncbi.nlm.nih.gov/pubmed/27701074
http://dx.doi.org/10.1093/nar/gkw893
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