Cargando…

IMG/M: integrated genome and metagenome comparative data analysis system

The Integrated Microbial Genomes with Microbiome Samples (IMG/M: https://img.jgi.doe.gov/m/) system contains annotated DNA and RNA sequence data of (i) archaeal, bacterial, eukaryotic and viral genomes from cultured organisms, (ii) single cell genomes (SCG) and genomes from metagenomes (GFM) from un...

Descripción completa

Detalles Bibliográficos
Autores principales:	Chen, I-Min A., Markowitz, Victor M., Chu, Ken, Palaniappan, Krishna, Szeto, Ernest, Pillay, Manoj, Ratner, Anna, Huang, Jinghua, Andersen, Evan, Huntemann, Marcel, Varghese, Neha, Hadjithomas, Michalis, Tennessen, Kristin, Nielsen, Torben, Ivanova, Natalia N., Kyrpides, Nikos C.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2017
Materias:	Database Issue
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210632/ https://www.ncbi.nlm.nih.gov/pubmed/27738135 http://dx.doi.org/10.1093/nar/gkw929

Ejemplares similares

IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
por: Hadjithomas, Michalis, et al.
Publicado: (2017)

IMG/M 4 version of the integrated metagenome comparative analysis system
por: Markowitz, Victor M., et al.
Publicado: (2014)

Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
por: Chen, I-Min A., et al.
Publicado: (2016)

IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
por: Chen, I-Min A, et al.
Publicado: (2019)

IMG 4 version of the integrated microbial genomes comparative analysis system
por: Markowitz, Victor M., et al.
Publicado: (2014)

IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
por: Markowitz, Victor M., et al.
Publicado: (2012)

IMG/M: the integrated metagenome data management and comparative analysis system
por: Markowitz, Victor M., et al.
Publicado: (2012)

IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites
por: Hadjithomas, Michalis, et al.
Publicado: (2015)

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses
por: Paez-Espino, David, et al.
Publicado: (2017)

IMG: the integrated microbial genomes database and comparative analysis system
por: Markowitz, Victor M., et al.
Publicado: (2012)

IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes
por: Paez-Espino, David, et al.
Publicado: (2019)

IMG/M: a data management and analysis system for metagenomes
por: Markowitz, Victor M., et al.
Publicado: (2008)

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
por: Huntemann, Marcel, et al.
Publicado: (2016)

The integrated microbial genomes (IMG) system
por: Markowitz, Victor M., et al.
Publicado: (2006)

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
por: Markowitz, Victor M., et al.
Publicado: (2008)

SOP for pathway inference in Integrated Microbial Genomes (IMG)
por: Anderson, Iain, et al.
Publicado: (2011)

Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System
por: Mavromatis, Konstantinos, et al.
Publicado: (2009)

Erratum to: The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
por: Huntemann, Marcel, et al.
Publicado: (2016)

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
por: Huntemann, Marcel, et al.
Publicado: (2015)

Permanent draft genome of Thermithiobaclillus tepidarius DSM 3134(T), a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia
por: Boden, Rich, et al.
Publicado: (2016)

Erratum to: Permanent draft genome of Thermithiobacillus tepidarius DSM 3134(T), a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia
por: Boden, Rich, et al.
Publicado: (2016)

An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1(T)
por: Nicholson, Wayne L., et al.
Publicado: (2016)

Permanent draft genome of Thiobacillus thioparus DSM 505(T), an obligately chemolithoautotrophic member of the Betaproteobacteria
por: Hutt, Lee P., et al.
Publicado: (2017)

Draft Genome Sequence of Heavy Metal-Resistant Cupriavidus alkaliphilus ASC-732(T), Isolated from Agave Rhizosphere in the Northeast of Mexico
por: Rojas-Rojas, Fernando Uriel, et al.
Publicado: (2016)

The integrated microbial genomes system: an expanding comparative analysis resource
por: Markowitz, Victor M., et al.
Publicado: (2010)

Draft genome sequence of Actinotignum schaalii DSM 15541(T): Genetic insights into the lifestyle, cell fitness and virulence
por: Yassin, Atteyet F., et al.
Publicado: (2017)

Complete Genome Sequence of Thermoanaerobacterium sp. Strain RBIITD, a Butyrate- and Butanol-Producing Thermophile
por: Biswas, Ranjita, et al.
Publicado: (2018)

Complete genome sequence of Jiangella gansuensis strain YIM 002(T) (DSM 44835(T)), the type species of the genus Jiangella and source of new antibiotic compounds
por: Jiao, Jian-Yu, et al.
Publicado: (2017)

High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482(T), isolated from raw cow milk
por: Laviad-Shitrit, Sivan, et al.
Publicado: (2017)

Absence of genome reduction in diverse, facultative endohyphal bacteria
por: Baltrus, David A., et al.
Publicado: (2017)

Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria
por: Ward, Ryan D., et al.
Publicado: (2021)

One Complete and Seven Draft Genome Sequences of Subdivision 1 and 3 Acidobacteria Isolated from Soil
por: Eichorst, Stephanie A., et al.
Publicado: (2020)

Metagenomes and Metatranscriptomes of a Glucose-Amended Agricultural Soil
por: Chuckran, Peter F., et al.
Publicado: (2020)

The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools
por: Wilke, Andreas, et al.
Publicado: (2012)

High-Quality Draft Genome Sequences of Eight Bacteria Isolated from Fungus Gardens Grown by Trachymyrmex septentrionalis Ants
por: Kopac, Sarah, et al.
Publicado: (2018)

High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11(T) (DSM 29698)
por: Patil, Yogita, et al.
Publicado: (2017)

The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes
por: Mavromatis, Konstantinos, et al.
Publicado: (2009)

Draft genome of Paraburkholderia caballeronis TNe-841(T), a free-living, nitrogen-fixing, tomato plant-associated bacterium
por: Rojas-Rojas, Fernando Uriel, et al.
Publicado: (2017)

DOE JGI Metagenome Workflow
por: Clum, Alicia, et al.
Publicado: (2021)

Draft Genome Sequence of Methylocapsa palsarum NE2(T), an Obligate Methanotroph from Subarctic Soil
por: Miroshnikov, Kirill K., et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_4fnlsv6ri8qok8p6hiacsg80n3