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Exposome-Explorer: a manually-curated database on biomarkers of exposure to dietary and environmental factors

Exposome-Explorer (http://exposome-explorer.iarc.fr) is the first database dedicated to biomarkers of exposure to environmental risk factors. It contains detailed information on the nature of biomarkers, their concentrations in various human biospecimens, the study population where measured and the...

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Autores principales: Neveu, Vanessa, Moussy, Alice, Rouaix, Héloïse, Wedekind, Roland, Pon, Allison, Knox, Craig, Wishart, David S., Scalbert, Augustin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210656/
https://www.ncbi.nlm.nih.gov/pubmed/27924041
http://dx.doi.org/10.1093/nar/gkw980
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author Neveu, Vanessa
Moussy, Alice
Rouaix, Héloïse
Wedekind, Roland
Pon, Allison
Knox, Craig
Wishart, David S.
Scalbert, Augustin
author_facet Neveu, Vanessa
Moussy, Alice
Rouaix, Héloïse
Wedekind, Roland
Pon, Allison
Knox, Craig
Wishart, David S.
Scalbert, Augustin
author_sort Neveu, Vanessa
collection PubMed
description Exposome-Explorer (http://exposome-explorer.iarc.fr) is the first database dedicated to biomarkers of exposure to environmental risk factors. It contains detailed information on the nature of biomarkers, their concentrations in various human biospecimens, the study population where measured and the analytical techniques used for measurement. It also contains correlations with external exposure measurements and data on biological reproducibility over time. The data in Exposome-Explorer was manually collected from peer-reviewed publications and organized to make it easily accessible through a web interface for in-depth analyses. The database and the web interface were developed using the Ruby on Rails framework. A total of 480 publications were analyzed and 10 510 concentration values in blood, urine and other biospecimens for 692 dietary and pollutant biomarkers were collected. Over 8000 correlation values between dietary biomarker levels and food intake as well as 536 values of biological reproducibility over time were also compiled. Exposome-Explorer makes it easy to compare the performance between biomarkers and their fields of application. It should be particularly useful for epidemiologists and clinicians wishing to select panels of biomarkers that can be used in biomonitoring studies or in exposome-wide association studies, thereby allowing them to better understand the etiology of chronic diseases.
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spelling pubmed-52106562017-01-05 Exposome-Explorer: a manually-curated database on biomarkers of exposure to dietary and environmental factors Neveu, Vanessa Moussy, Alice Rouaix, Héloïse Wedekind, Roland Pon, Allison Knox, Craig Wishart, David S. Scalbert, Augustin Nucleic Acids Res Database Issue Exposome-Explorer (http://exposome-explorer.iarc.fr) is the first database dedicated to biomarkers of exposure to environmental risk factors. It contains detailed information on the nature of biomarkers, their concentrations in various human biospecimens, the study population where measured and the analytical techniques used for measurement. It also contains correlations with external exposure measurements and data on biological reproducibility over time. The data in Exposome-Explorer was manually collected from peer-reviewed publications and organized to make it easily accessible through a web interface for in-depth analyses. The database and the web interface were developed using the Ruby on Rails framework. A total of 480 publications were analyzed and 10 510 concentration values in blood, urine and other biospecimens for 692 dietary and pollutant biomarkers were collected. Over 8000 correlation values between dietary biomarker levels and food intake as well as 536 values of biological reproducibility over time were also compiled. Exposome-Explorer makes it easy to compare the performance between biomarkers and their fields of application. It should be particularly useful for epidemiologists and clinicians wishing to select panels of biomarkers that can be used in biomonitoring studies or in exposome-wide association studies, thereby allowing them to better understand the etiology of chronic diseases. Oxford University Press 2017-01-04 2016-10-24 /pmc/articles/PMC5210656/ /pubmed/27924041 http://dx.doi.org/10.1093/nar/gkw980 Text en © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Database Issue
Neveu, Vanessa
Moussy, Alice
Rouaix, Héloïse
Wedekind, Roland
Pon, Allison
Knox, Craig
Wishart, David S.
Scalbert, Augustin
Exposome-Explorer: a manually-curated database on biomarkers of exposure to dietary and environmental factors
title Exposome-Explorer: a manually-curated database on biomarkers of exposure to dietary and environmental factors
title_full Exposome-Explorer: a manually-curated database on biomarkers of exposure to dietary and environmental factors
title_fullStr Exposome-Explorer: a manually-curated database on biomarkers of exposure to dietary and environmental factors
title_full_unstemmed Exposome-Explorer: a manually-curated database on biomarkers of exposure to dietary and environmental factors
title_short Exposome-Explorer: a manually-curated database on biomarkers of exposure to dietary and environmental factors
title_sort exposome-explorer: a manually-curated database on biomarkers of exposure to dietary and environmental factors
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210656/
https://www.ncbi.nlm.nih.gov/pubmed/27924041
http://dx.doi.org/10.1093/nar/gkw980
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