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Automatic prediction of tumour malignancy in breast cancer with fractal dimension
Breast cancer is one of the most prevalent types of cancer today in women. The main avenue of diagnosis is through manual examination of histopathology tissue slides. Such a process is often subjective and error-ridden, suffering from both inter- and intraobserver variability. Our objective is to de...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society Publishing
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210682/ https://www.ncbi.nlm.nih.gov/pubmed/28083100 http://dx.doi.org/10.1098/rsos.160558 |
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author | Chan, Alan Tuszynski, Jack A. |
author_facet | Chan, Alan Tuszynski, Jack A. |
author_sort | Chan, Alan |
collection | PubMed |
description | Breast cancer is one of the most prevalent types of cancer today in women. The main avenue of diagnosis is through manual examination of histopathology tissue slides. Such a process is often subjective and error-ridden, suffering from both inter- and intraobserver variability. Our objective is to develop an automatic algorithm for analysing histopathology slides free of human subjectivity. Here, we calculate the fractal dimension of images of numerous breast cancer slides, at magnifications of 40×, 100×, 200× and 400×. Using machine learning, specifically, the support vector machine (SVM) method, the F1 score for classification accuracy of the 40× slides was found to be 0.979. Multiclass classification on the 40× slides yielded an accuracy of 0.556. A reduction of the size and scope of the SVM training set gave an average F1 score of 0.964. Taken together, these results show great promise in the use of fractal dimension to predict tumour malignancy. |
format | Online Article Text |
id | pubmed-5210682 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | The Royal Society Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-52106822017-01-12 Automatic prediction of tumour malignancy in breast cancer with fractal dimension Chan, Alan Tuszynski, Jack A. R Soc Open Sci Biology (Whole Organism) Breast cancer is one of the most prevalent types of cancer today in women. The main avenue of diagnosis is through manual examination of histopathology tissue slides. Such a process is often subjective and error-ridden, suffering from both inter- and intraobserver variability. Our objective is to develop an automatic algorithm for analysing histopathology slides free of human subjectivity. Here, we calculate the fractal dimension of images of numerous breast cancer slides, at magnifications of 40×, 100×, 200× and 400×. Using machine learning, specifically, the support vector machine (SVM) method, the F1 score for classification accuracy of the 40× slides was found to be 0.979. Multiclass classification on the 40× slides yielded an accuracy of 0.556. A reduction of the size and scope of the SVM training set gave an average F1 score of 0.964. Taken together, these results show great promise in the use of fractal dimension to predict tumour malignancy. The Royal Society Publishing 2016-12-07 /pmc/articles/PMC5210682/ /pubmed/28083100 http://dx.doi.org/10.1098/rsos.160558 Text en © 2016 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Biology (Whole Organism) Chan, Alan Tuszynski, Jack A. Automatic prediction of tumour malignancy in breast cancer with fractal dimension |
title | Automatic prediction of tumour malignancy in breast cancer with fractal dimension |
title_full | Automatic prediction of tumour malignancy in breast cancer with fractal dimension |
title_fullStr | Automatic prediction of tumour malignancy in breast cancer with fractal dimension |
title_full_unstemmed | Automatic prediction of tumour malignancy in breast cancer with fractal dimension |
title_short | Automatic prediction of tumour malignancy in breast cancer with fractal dimension |
title_sort | automatic prediction of tumour malignancy in breast cancer with fractal dimension |
topic | Biology (Whole Organism) |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210682/ https://www.ncbi.nlm.nih.gov/pubmed/28083100 http://dx.doi.org/10.1098/rsos.160558 |
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