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Lake sedimentary DNA accurately records 20(th) Century introductions of exotic conifers in Scotland

Sedimentary DNA (sedDNA) has recently emerged as a new proxy for reconstructing past vegetation, but its taphonomy, source area and representation biases need better assessment. We investigated how sedDNA in recent sediments of two small Scottish lakes reflects a major vegetation change, using well‐...

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Autores principales: Sjögren, Per, Edwards, Mary E., Gielly, Ludovic, Langdon, Catherine T., Croudace, Ian W., Merkel, Marie Kristine Føreid, Fonville, Thierry, Alsos, Inger Greve
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5215665/
https://www.ncbi.nlm.nih.gov/pubmed/27678125
http://dx.doi.org/10.1111/nph.14199
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author Sjögren, Per
Edwards, Mary E.
Gielly, Ludovic
Langdon, Catherine T.
Croudace, Ian W.
Merkel, Marie Kristine Føreid
Fonville, Thierry
Alsos, Inger Greve
author_facet Sjögren, Per
Edwards, Mary E.
Gielly, Ludovic
Langdon, Catherine T.
Croudace, Ian W.
Merkel, Marie Kristine Føreid
Fonville, Thierry
Alsos, Inger Greve
author_sort Sjögren, Per
collection PubMed
description Sedimentary DNA (sedDNA) has recently emerged as a new proxy for reconstructing past vegetation, but its taphonomy, source area and representation biases need better assessment. We investigated how sedDNA in recent sediments of two small Scottish lakes reflects a major vegetation change, using well‐documented 20(th) Century plantations of exotic conifers as an experimental system. We used next‐generation sequencing to barcode sedDNA retrieved from subrecent lake sediments. For comparison, pollen was analysed from the same samples. The sedDNA record contains 73 taxa (mainly genus or species), all but one of which are present in the study area. Pollen and sedDNA shared 35% of taxa, which partly reflects a difference in source area. More aquatic taxa were recorded in sedDNA, whereas taxa assumed to be of regional rather than local origin were recorded only as pollen. The chronology of the sediments and planting records are well aligned, and sedDNA of exotic conifers appears in high quantities with the establishment of plantations around the lakes. SedDNA recorded other changes in local vegetation that accompanied afforestation. There were no signs of DNA leaching in the sediments or DNA originating from pollen.
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spelling pubmed-52156652017-01-18 Lake sedimentary DNA accurately records 20(th) Century introductions of exotic conifers in Scotland Sjögren, Per Edwards, Mary E. Gielly, Ludovic Langdon, Catherine T. Croudace, Ian W. Merkel, Marie Kristine Føreid Fonville, Thierry Alsos, Inger Greve New Phytol Research Sedimentary DNA (sedDNA) has recently emerged as a new proxy for reconstructing past vegetation, but its taphonomy, source area and representation biases need better assessment. We investigated how sedDNA in recent sediments of two small Scottish lakes reflects a major vegetation change, using well‐documented 20(th) Century plantations of exotic conifers as an experimental system. We used next‐generation sequencing to barcode sedDNA retrieved from subrecent lake sediments. For comparison, pollen was analysed from the same samples. The sedDNA record contains 73 taxa (mainly genus or species), all but one of which are present in the study area. Pollen and sedDNA shared 35% of taxa, which partly reflects a difference in source area. More aquatic taxa were recorded in sedDNA, whereas taxa assumed to be of regional rather than local origin were recorded only as pollen. The chronology of the sediments and planting records are well aligned, and sedDNA of exotic conifers appears in high quantities with the establishment of plantations around the lakes. SedDNA recorded other changes in local vegetation that accompanied afforestation. There were no signs of DNA leaching in the sediments or DNA originating from pollen. John Wiley and Sons Inc. 2016-09-28 2017-01 /pmc/articles/PMC5215665/ /pubmed/27678125 http://dx.doi.org/10.1111/nph.14199 Text en © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research
Sjögren, Per
Edwards, Mary E.
Gielly, Ludovic
Langdon, Catherine T.
Croudace, Ian W.
Merkel, Marie Kristine Føreid
Fonville, Thierry
Alsos, Inger Greve
Lake sedimentary DNA accurately records 20(th) Century introductions of exotic conifers in Scotland
title Lake sedimentary DNA accurately records 20(th) Century introductions of exotic conifers in Scotland
title_full Lake sedimentary DNA accurately records 20(th) Century introductions of exotic conifers in Scotland
title_fullStr Lake sedimentary DNA accurately records 20(th) Century introductions of exotic conifers in Scotland
title_full_unstemmed Lake sedimentary DNA accurately records 20(th) Century introductions of exotic conifers in Scotland
title_short Lake sedimentary DNA accurately records 20(th) Century introductions of exotic conifers in Scotland
title_sort lake sedimentary dna accurately records 20(th) century introductions of exotic conifers in scotland
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5215665/
https://www.ncbi.nlm.nih.gov/pubmed/27678125
http://dx.doi.org/10.1111/nph.14199
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