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Cyberinfrastructure for Open Science at the Montreal Neurological Institute

Data sharing is becoming more of a requirement as technologies mature and as global research and communications diversify. As a result, researchers are looking for practical solutions, not only to enhance scientific collaborations, but also to acquire larger amounts of data, and to access specialize...

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Autores principales: Das, Samir, Glatard, Tristan, Rogers, Christine, Saigle, John, Paiva, Santiago, MacIntyre, Leigh, Safi-Harab, Mouna, Rousseau, Marc-Etienne, Stirling, Jordan, Khalili-Mahani, Najmeh, MacFarlane, David, Kostopoulos, Penelope, Rioux, Pierre, Madjar, Cecile, Lecours-Boucher, Xavier, Vanamala, Sandeep, Adalat, Reza, Mohaddes, Zia, Fonov, Vladimir S., Milot, Sylvain, Leppert, Ilana, Degroot, Clotilde, Durcan, Thomas M., Campbell, Tara, Moreau, Jeremy, Dagher, Alain, Collins, D. Louis, Karamchandani, Jason, Bar-Or, Amit, Fon, Edward A., Hoge, Rick, Baillet, Sylvain, Rouleau, Guy, Evans, Alan C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5216036/
https://www.ncbi.nlm.nih.gov/pubmed/28111547
http://dx.doi.org/10.3389/fninf.2016.00053
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author Das, Samir
Glatard, Tristan
Rogers, Christine
Saigle, John
Paiva, Santiago
MacIntyre, Leigh
Safi-Harab, Mouna
Rousseau, Marc-Etienne
Stirling, Jordan
Khalili-Mahani, Najmeh
MacFarlane, David
Kostopoulos, Penelope
Rioux, Pierre
Madjar, Cecile
Lecours-Boucher, Xavier
Vanamala, Sandeep
Adalat, Reza
Mohaddes, Zia
Fonov, Vladimir S.
Milot, Sylvain
Leppert, Ilana
Degroot, Clotilde
Durcan, Thomas M.
Campbell, Tara
Moreau, Jeremy
Dagher, Alain
Collins, D. Louis
Karamchandani, Jason
Bar-Or, Amit
Fon, Edward A.
Hoge, Rick
Baillet, Sylvain
Rouleau, Guy
Evans, Alan C.
author_facet Das, Samir
Glatard, Tristan
Rogers, Christine
Saigle, John
Paiva, Santiago
MacIntyre, Leigh
Safi-Harab, Mouna
Rousseau, Marc-Etienne
Stirling, Jordan
Khalili-Mahani, Najmeh
MacFarlane, David
Kostopoulos, Penelope
Rioux, Pierre
Madjar, Cecile
Lecours-Boucher, Xavier
Vanamala, Sandeep
Adalat, Reza
Mohaddes, Zia
Fonov, Vladimir S.
Milot, Sylvain
Leppert, Ilana
Degroot, Clotilde
Durcan, Thomas M.
Campbell, Tara
Moreau, Jeremy
Dagher, Alain
Collins, D. Louis
Karamchandani, Jason
Bar-Or, Amit
Fon, Edward A.
Hoge, Rick
Baillet, Sylvain
Rouleau, Guy
Evans, Alan C.
author_sort Das, Samir
collection PubMed
description Data sharing is becoming more of a requirement as technologies mature and as global research and communications diversify. As a result, researchers are looking for practical solutions, not only to enhance scientific collaborations, but also to acquire larger amounts of data, and to access specialized datasets. In many cases, the realities of data acquisition present a significant burden, therefore gaining access to public datasets allows for more robust analyses and broadly enriched data exploration. To answer this demand, the Montreal Neurological Institute has announced its commitment to Open Science, harnessing the power of making both clinical and research data available to the world (Owens, 2016a,b). As such, the LORIS and CBRAIN (Das et al., 2016 1. Comprehensive linking of multimodal data (phenotypic, clinical, neuroimaging, biobanking, and genomics, etc.). 2. Secure database encryption, specifically designed for institutional and multi-project data sharing, ensuring subject confidentiality (using multi-tiered identifiers). 3. Querying capabilities with multiple levels of single study and institutional permissions, allowing public data sharing for all consented and de-identified subject data. 4. Configurable pipelines and flags to facilitate acquisition and analysis, as well as access to High Performance Computing clusters for rapid data processing and sharing of software tools. 5. Robust Workflows and Quality Control mechanisms ensuring transparency and consistency in best practices. 6. Long term storage (and web access) of data, reducing loss of institutional data assets. 7. Enhanced web-based visualization of imaging, genomic, and phenotypic data, allowing for real-time viewing and manipulation of data from anywhere in the world. 8. Numerous modules for data filtering, summary statistics, and personalized and configurable dashboards. Implementing the vision of Open Science at the Montreal Neurological Institute will be a concerted undertaking that seeks to facilitate data sharing for the global research community. Our goal is to utilize the years of experience in multi-site collaborative research infrastructure to implement the technical requirements to achieve this level of public data sharing in a practical yet robust manner, in support of accelerating scientific discovery.
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spelling pubmed-52160362017-01-20 Cyberinfrastructure for Open Science at the Montreal Neurological Institute Das, Samir Glatard, Tristan Rogers, Christine Saigle, John Paiva, Santiago MacIntyre, Leigh Safi-Harab, Mouna Rousseau, Marc-Etienne Stirling, Jordan Khalili-Mahani, Najmeh MacFarlane, David Kostopoulos, Penelope Rioux, Pierre Madjar, Cecile Lecours-Boucher, Xavier Vanamala, Sandeep Adalat, Reza Mohaddes, Zia Fonov, Vladimir S. Milot, Sylvain Leppert, Ilana Degroot, Clotilde Durcan, Thomas M. Campbell, Tara Moreau, Jeremy Dagher, Alain Collins, D. Louis Karamchandani, Jason Bar-Or, Amit Fon, Edward A. Hoge, Rick Baillet, Sylvain Rouleau, Guy Evans, Alan C. Front Neuroinform Neuroscience Data sharing is becoming more of a requirement as technologies mature and as global research and communications diversify. As a result, researchers are looking for practical solutions, not only to enhance scientific collaborations, but also to acquire larger amounts of data, and to access specialized datasets. In many cases, the realities of data acquisition present a significant burden, therefore gaining access to public datasets allows for more robust analyses and broadly enriched data exploration. To answer this demand, the Montreal Neurological Institute has announced its commitment to Open Science, harnessing the power of making both clinical and research data available to the world (Owens, 2016a,b). As such, the LORIS and CBRAIN (Das et al., 2016 1. Comprehensive linking of multimodal data (phenotypic, clinical, neuroimaging, biobanking, and genomics, etc.). 2. Secure database encryption, specifically designed for institutional and multi-project data sharing, ensuring subject confidentiality (using multi-tiered identifiers). 3. Querying capabilities with multiple levels of single study and institutional permissions, allowing public data sharing for all consented and de-identified subject data. 4. Configurable pipelines and flags to facilitate acquisition and analysis, as well as access to High Performance Computing clusters for rapid data processing and sharing of software tools. 5. Robust Workflows and Quality Control mechanisms ensuring transparency and consistency in best practices. 6. Long term storage (and web access) of data, reducing loss of institutional data assets. 7. Enhanced web-based visualization of imaging, genomic, and phenotypic data, allowing for real-time viewing and manipulation of data from anywhere in the world. 8. Numerous modules for data filtering, summary statistics, and personalized and configurable dashboards. Implementing the vision of Open Science at the Montreal Neurological Institute will be a concerted undertaking that seeks to facilitate data sharing for the global research community. Our goal is to utilize the years of experience in multi-site collaborative research infrastructure to implement the technical requirements to achieve this level of public data sharing in a practical yet robust manner, in support of accelerating scientific discovery. Frontiers Media S.A. 2017-01-06 /pmc/articles/PMC5216036/ /pubmed/28111547 http://dx.doi.org/10.3389/fninf.2016.00053 Text en Copyright © 2017 Das, Glatard, Rogers, Saigle, Paiva, MacIntyre, Safi-Harab, Rousseau, Stirling, Khalili-Mahani, MacFarlane, Kostopoulos, Rioux, Madjar, Lecours-Boucher, Vanamala, Adalat, Mohaddes, Fonov, Milot, Leppert, Degroot, Durcan, Campbell, Moreau, Dagher, Collins, Karamchandani, Bar-Or, Fon, Hoge, Baillet, Rouleau and Evans. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Das, Samir
Glatard, Tristan
Rogers, Christine
Saigle, John
Paiva, Santiago
MacIntyre, Leigh
Safi-Harab, Mouna
Rousseau, Marc-Etienne
Stirling, Jordan
Khalili-Mahani, Najmeh
MacFarlane, David
Kostopoulos, Penelope
Rioux, Pierre
Madjar, Cecile
Lecours-Boucher, Xavier
Vanamala, Sandeep
Adalat, Reza
Mohaddes, Zia
Fonov, Vladimir S.
Milot, Sylvain
Leppert, Ilana
Degroot, Clotilde
Durcan, Thomas M.
Campbell, Tara
Moreau, Jeremy
Dagher, Alain
Collins, D. Louis
Karamchandani, Jason
Bar-Or, Amit
Fon, Edward A.
Hoge, Rick
Baillet, Sylvain
Rouleau, Guy
Evans, Alan C.
Cyberinfrastructure for Open Science at the Montreal Neurological Institute
title Cyberinfrastructure for Open Science at the Montreal Neurological Institute
title_full Cyberinfrastructure for Open Science at the Montreal Neurological Institute
title_fullStr Cyberinfrastructure for Open Science at the Montreal Neurological Institute
title_full_unstemmed Cyberinfrastructure for Open Science at the Montreal Neurological Institute
title_short Cyberinfrastructure for Open Science at the Montreal Neurological Institute
title_sort cyberinfrastructure for open science at the montreal neurological institute
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5216036/
https://www.ncbi.nlm.nih.gov/pubmed/28111547
http://dx.doi.org/10.3389/fninf.2016.00053
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