Complete genome sequence of the heavy metal resistant bacterium Agromyces aureus AR33(T) and comparison with related Actinobacteria

Agromyces aureus AR33(T) is a Gram-positive, rod-shaped and motile bacterium belonging to the Microbacteriaceae family in the phylum Actinobacteria that was isolated from a former zinc/lead mining and processing site in Austria. In this study, the whole genome was sequenced and assembled combining s...

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Autores principales: Corretto, Erika, Antonielli, Livio, Sessitsch, Angela, Compant, Stéphane, Höfer, Christoph, Puschenreiter, Markus, Brader, Günter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Short Genome Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5217419/
https://www.ncbi.nlm.nih.gov/pubmed/28074120
http://dx.doi.org/10.1186/s40793-016-0217-z
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author Corretto, Erika
Antonielli, Livio
Sessitsch, Angela
Compant, Stéphane
Höfer, Christoph
Puschenreiter, Markus
Brader, Günter
author_facet Corretto, Erika
Antonielli, Livio
Sessitsch, Angela
Compant, Stéphane
Höfer, Christoph
Puschenreiter, Markus
Brader, Günter
author_sort Corretto, Erika
collection PubMed
description Agromyces aureus AR33(T) is a Gram-positive, rod-shaped and motile bacterium belonging to the Microbacteriaceae family in the phylum Actinobacteria that was isolated from a former zinc/lead mining and processing site in Austria. In this study, the whole genome was sequenced and assembled combining sequences obtained from Illumina MiSeq and Sanger sequencing. The assembly resulted in the complete genome sequence which is 4,373,124 bp long and has a GC content of 70.1%. Furthermore, we performed a comparative genomic analysis with other related organisms: 6 Agromyces spp., 4 Microbacteriaceae spp. and 2 other members of the class Actinobacteria. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-016-0217-z) contains supplementary material, which is available to authorized users.
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spelling pubmed-52174192017-01-10 Complete genome sequence of the heavy metal resistant bacterium Agromyces aureus AR33(T) and comparison with related Actinobacteria Corretto, Erika Antonielli, Livio Sessitsch, Angela Compant, Stéphane Höfer, Christoph Puschenreiter, Markus Brader, Günter Stand Genomic Sci Short Genome Report Agromyces aureus AR33(T) is a Gram-positive, rod-shaped and motile bacterium belonging to the Microbacteriaceae family in the phylum Actinobacteria that was isolated from a former zinc/lead mining and processing site in Austria. In this study, the whole genome was sequenced and assembled combining sequences obtained from Illumina MiSeq and Sanger sequencing. The assembly resulted in the complete genome sequence which is 4,373,124 bp long and has a GC content of 70.1%. Furthermore, we performed a comparative genomic analysis with other related organisms: 6 Agromyces spp., 4 Microbacteriaceae spp. and 2 other members of the class Actinobacteria. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-016-0217-z) contains supplementary material, which is available to authorized users. BioMed Central 2017-01-05 /pmc/articles/PMC5217419/ /pubmed/28074120 http://dx.doi.org/10.1186/s40793-016-0217-z Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Corretto, Erika
Antonielli, Livio
Sessitsch, Angela
Compant, Stéphane
Höfer, Christoph
Puschenreiter, Markus
Brader, Günter
Complete genome sequence of the heavy metal resistant bacterium Agromyces aureus AR33(T) and comparison with related Actinobacteria
title Complete genome sequence of the heavy metal resistant bacterium Agromyces aureus AR33(T) and comparison with related Actinobacteria
title_full Complete genome sequence of the heavy metal resistant bacterium Agromyces aureus AR33(T) and comparison with related Actinobacteria
title_fullStr Complete genome sequence of the heavy metal resistant bacterium Agromyces aureus AR33(T) and comparison with related Actinobacteria
title_full_unstemmed Complete genome sequence of the heavy metal resistant bacterium Agromyces aureus AR33(T) and comparison with related Actinobacteria
title_short Complete genome sequence of the heavy metal resistant bacterium Agromyces aureus AR33(T) and comparison with related Actinobacteria
title_sort complete genome sequence of the heavy metal resistant bacterium agromyces aureus ar33(t) and comparison with related actinobacteria
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5217419/
https://www.ncbi.nlm.nih.gov/pubmed/28074120
http://dx.doi.org/10.1186/s40793-016-0217-z
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