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Glycoside Hydrolases across Environmental Microbial Communities
Across many environments microbial glycoside hydrolases support the enzymatic processing of carbohydrates, a critical function in many ecosystems. Little is known about how the microbial composition of a community and the potential for carbohydrate processing relate to each other. Here, using 1,934...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5218504/ https://www.ncbi.nlm.nih.gov/pubmed/27992426 http://dx.doi.org/10.1371/journal.pcbi.1005300 |
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author | Berlemont, Renaud Martiny, Adam C. |
author_facet | Berlemont, Renaud Martiny, Adam C. |
author_sort | Berlemont, Renaud |
collection | PubMed |
description | Across many environments microbial glycoside hydrolases support the enzymatic processing of carbohydrates, a critical function in many ecosystems. Little is known about how the microbial composition of a community and the potential for carbohydrate processing relate to each other. Here, using 1,934 metagenomic datasets, we linked changes in community composition to variation of potential for carbohydrate processing across environments. We were able to show that each ecosystem-type displays a specific potential for carbohydrate utilization. Most of this potential was associated with just 77 bacterial genera. The GH content in bacterial genera is best described by their taxonomic affiliation. Across metagenomes, fluctuations of the microbial community structure and GH potential for carbohydrate utilization were correlated. Our analysis reveals that both deterministic and stochastic processes contribute to the assembly of complex microbial communities. |
format | Online Article Text |
id | pubmed-5218504 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-52185042017-01-19 Glycoside Hydrolases across Environmental Microbial Communities Berlemont, Renaud Martiny, Adam C. PLoS Comput Biol Research Article Across many environments microbial glycoside hydrolases support the enzymatic processing of carbohydrates, a critical function in many ecosystems. Little is known about how the microbial composition of a community and the potential for carbohydrate processing relate to each other. Here, using 1,934 metagenomic datasets, we linked changes in community composition to variation of potential for carbohydrate processing across environments. We were able to show that each ecosystem-type displays a specific potential for carbohydrate utilization. Most of this potential was associated with just 77 bacterial genera. The GH content in bacterial genera is best described by their taxonomic affiliation. Across metagenomes, fluctuations of the microbial community structure and GH potential for carbohydrate utilization were correlated. Our analysis reveals that both deterministic and stochastic processes contribute to the assembly of complex microbial communities. Public Library of Science 2016-12-19 /pmc/articles/PMC5218504/ /pubmed/27992426 http://dx.doi.org/10.1371/journal.pcbi.1005300 Text en © 2016 Berlemont, Martiny http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Berlemont, Renaud Martiny, Adam C. Glycoside Hydrolases across Environmental Microbial Communities |
title | Glycoside Hydrolases across Environmental Microbial Communities |
title_full | Glycoside Hydrolases across Environmental Microbial Communities |
title_fullStr | Glycoside Hydrolases across Environmental Microbial Communities |
title_full_unstemmed | Glycoside Hydrolases across Environmental Microbial Communities |
title_short | Glycoside Hydrolases across Environmental Microbial Communities |
title_sort | glycoside hydrolases across environmental microbial communities |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5218504/ https://www.ncbi.nlm.nih.gov/pubmed/27992426 http://dx.doi.org/10.1371/journal.pcbi.1005300 |
work_keys_str_mv | AT berlemontrenaud glycosidehydrolasesacrossenvironmentalmicrobialcommunities AT martinyadamc glycosidehydrolasesacrossenvironmentalmicrobialcommunities |