Cargando…

Bayesian ABC-MCMC Classification of Liquid Chromatography–Mass Spectrometry Data

Proteomics promises to revolutionize cancer treatment and prevention by facilitating the discovery of molecular biomarkers. Progress has been impeded, however, by the small-sample, high-dimensional nature of proteomic data. We propose the application of a Bayesian approach to address this issue in c...

Descripción completa

Detalles Bibliográficos
Autores principales:	Banerjee, Upamanyu, Braga-Neto, Ulisses M.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Libertas Academica 2017
Materias:	Methodology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5224349/ https://www.ncbi.nlm.nih.gov/pubmed/28096647 http://dx.doi.org/10.4137/CIN.S30798

Ejemplares similares

BPDA - A Bayesian peptide detection algorithm for mass spectrometry
por: Sun, Youting, et al.
Publicado: (2010)

BigFoot: Bayesian alignment and phylogenetic footprinting with MCMC
por: Satija, Rahul, et al.
Publicado: (2009)

Statistical quality assessment and outlier detection for liquid chromatography-mass spectrometry experiments
por: Schulz-Trieglaff, Ole, et al.
Publicado: (2009)

Quantitation of paracetamol by liquid chromatography–mass spectrometry in human plasma in support of clinical trial
por: Kam, Richard Kin-Ting, et al.
Publicado: (2018)

Simultaneous and enantiospecific quantification of primaquine and carboxyprimaquine in human plasma using liquid chromatography-tandem mass spectrometry
por: Hanpithakpong, Warunee, et al.
Publicado: (2022)

Assaying proline hydroxylation in recombinant collagen variants by liquid chromatography-mass spectrometry
por: Chan, S W Polly, et al.
Publicado: (2012)

A novel method for prenylquinone profiling in plant tissues by ultra-high pressure liquid chromatography-mass spectrometry
por: Martinis, Jacopo, et al.
Publicado: (2011)

Determination of stanozolol and 3(′)-hydroxystanozolol in rat hair, urine and serum using liquid chromatography tandem mass spectrometry
por: Deshmukh, Nawed IK, et al.
Publicado: (2012)

Rapid and sensitive hormonal profiling of complex plant samples by liquid chromatography coupled to electrospray ionization tandem mass spectrometry
por: Müller, Maren, et al.
Publicado: (2011)

Bayesian Network Reconstruction Using Systems Genetics Data: Comparison of MCMC Methods
por: Tasaki, Shinya, et al.
Publicado: (2015)

Analytical method for the determination of organic acids in dilute acid pretreated biomass hydrolysate by liquid chromatography-time-of-flight mass spectrometry
por: Ibáñez, Ana B, et al.
Publicado: (2014)

MCMC for Bayesian Uncertainty Quantification from Time-Series Data
por: Maybank, Philip, et al.
Publicado: (2020)

A Bayesian network approach to feature selection in mass spectrometry data
por: Kuschner, Karl W, et al.
Publicado: (2010)

Bayesian Classification of Proteomics Biomarkers from Selected Reaction Monitoring Data using an Approximate Bayesian Computation-Markov Chain Monte Carlo Approach
por: Nagaraja, Kashyap, et al.
Publicado: (2018)

Likelihood, Bayesian, and mcmc methods in quantitative genetics
por: Sorensen, Daniel, et al.
Publicado: (2002)

Method optimization and validation for the simultaneous determination of arachidonic acid metabolites in exhaled breath condensate by liquid chromatography-electrospray ionization tandem mass spectrometry
por: Gonzalez-Reche, Luis M, et al.
Publicado: (2006)

Quantification of imatinib in human serum: validation of a high-performance liquid chromatography-mass spectrometry method for therapeutic drug monitoring and pharmacokinetic assays
por: Rezende, Vinicius Marcondes, et al.
Publicado: (2013)

Mixture model normalization for non-targeted gas chromatography/mass spectrometry metabolomics data
por: Reisetter, Anna C., et al.
Publicado: (2017)

Analysis of Primary Liquid Chromatography Mass Spectrometry Data by Neural Networks for Plant Samples Classification
por: Turova, Polina, et al.
Publicado: (2022)

Concurrent profiling of indole-3-acetic acid, abscisic acid, and cytokinins and structurally related purines by high-performance-liquid-chromatography tandem electrospray mass spectrometry
por: Farrow, Scott C, et al.
Publicado: (2012)

Simultaneous untargeted and targeted metabolomics profiling of underivatized primary metabolites in sulfur-deficient barley by ultra-high performance liquid chromatography-quadrupole/time-of-flight mass spectrometry
por: Ghosson, Hikmat, et al.
Publicado: (2018)

Enhancing Classification of liquid chromatography mass spectrometry data with Batch Effect Removal Neural Networks (BERNN)
por: Droit, Arnaud, et al.
Publicado: (2023)

Fast MCMC sampling for hidden markov models to determine copy number variations
por: Mahmud, Md Pavel, et al.
Publicado: (2011)

Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data
por: Zhang, Xuegong, et al.
Publicado: (2006)

Back to the Basics of Liquid Chromatography-Mass Spectrometry
por: Kim, Young Jin, et al.
Publicado: (2022)

Comparing MCMC and INLA for disease mapping with Bayesian hierarchical models
por: De Smedt, Tom, et al.
Publicado: (2015)

On the Bias of Precision Estimation Under Separate Sampling
por: Xie, Shuilian, et al.
Publicado: (2019)

Two-step derivatization for determination of sugar phosphates in plants by combined reversed phase chromatography/tandem mass spectrometry
por: Rende, Umut, et al.
Publicado: (2019)

MCMC implementation of the optimal Bayesian classifier for non-Gaussian models: model-based RNA-Seq classification
por: Knight, Jason M, et al.
Publicado: (2014)

A Markov chain Monte Carlo (MCMC) methodology with bootstrap percentile estimates for predicting presidential election results in Ghana
por: Nortey, Ezekiel N. N., et al.
Publicado: (2015)

Classification of premalignant pancreatic cancer mass-spectrometry data using decision tree ensembles
por: Ge, Guangtao, et al.
Publicado: (2008)

Combining metal oxide affinity chromatography (MOAC) and selective mass spectrometry for robust identification of in vivo protein phosphorylation sites
por: Wolschin, Florian, et al.
Publicado: (2005)

Accurate and efficient amino acid analysis for protein quantification using hydrophilic interaction chromatography coupled tandem mass spectrometry
por: Kambhampati, Shrikaar, et al.
Publicado: (2019)

Smith-Waterman peak alignment for comprehensive two-dimensional gas chromatography-mass spectrometry
por: Kim, Seongho, et al.
Publicado: (2011)

A simple peak detection and label-free quantitation algorithm for chromatography-mass spectrometry
por: Aoshima, Ken, et al.
Publicado: (2014)

Classification and Error Estimation for Discrete Data
por: Braga-Neto, Ulisses M
Publicado: (2009)

FPGA acceleration of the phylogenetic likelihood function for Bayesian MCMC inference methods
por: Zierke, Stephanie, et al.
Publicado: (2010)

Bayesian Prior Choice in IRT Estimation Using MCMC and Variational Bayes
por: Natesan, Prathiba, et al.
Publicado: (2016)

Amount of Escape Estimation Based on Bayesian and MCMC Approaches for RNA Interference
por: Liu, Tian, et al.
Publicado: (2019)

Quantification of Protein Phosphorylation by Liquid Chromatography−Mass Spectrometry
por: Previs, Michael J., et al.
Publicado: (2008)

Cannot write session to /tmp/vufind_sessions/sess_ek6gemt4bbe22ahsdn8imel04t