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Stain Deconvolution Using Statistical Analysis of Multi-Resolution Stain Colour Representation
Stain colour estimation is a prominent factor of the analysis pipeline in most of histology image processing algorithms. Providing a reliable and efficient stain colour deconvolution approach is fundamental for robust algorithm. In this paper, we propose a novel method for stain colour deconvolution...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5226799/ https://www.ncbi.nlm.nih.gov/pubmed/28076381 http://dx.doi.org/10.1371/journal.pone.0169875 |
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author | Alsubaie, Najah Trahearn, Nicholas Raza, Shan E. Ahmed Snead, David Rajpoot, Nasir M. |
author_facet | Alsubaie, Najah Trahearn, Nicholas Raza, Shan E. Ahmed Snead, David Rajpoot, Nasir M. |
author_sort | Alsubaie, Najah |
collection | PubMed |
description | Stain colour estimation is a prominent factor of the analysis pipeline in most of histology image processing algorithms. Providing a reliable and efficient stain colour deconvolution approach is fundamental for robust algorithm. In this paper, we propose a novel method for stain colour deconvolution of histology images. This approach statistically analyses the multi-resolutional representation of the image to separate the independent observations out of the correlated ones. We then estimate the stain mixing matrix using filtered uncorrelated data. We conducted an extensive set of experiments to compare the proposed method to the recent state of the art methods and demonstrate the robustness of this approach using three different datasets of scanned slides, prepared in different labs using different scanners. |
format | Online Article Text |
id | pubmed-5226799 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-52267992017-01-31 Stain Deconvolution Using Statistical Analysis of Multi-Resolution Stain Colour Representation Alsubaie, Najah Trahearn, Nicholas Raza, Shan E. Ahmed Snead, David Rajpoot, Nasir M. PLoS One Research Article Stain colour estimation is a prominent factor of the analysis pipeline in most of histology image processing algorithms. Providing a reliable and efficient stain colour deconvolution approach is fundamental for robust algorithm. In this paper, we propose a novel method for stain colour deconvolution of histology images. This approach statistically analyses the multi-resolutional representation of the image to separate the independent observations out of the correlated ones. We then estimate the stain mixing matrix using filtered uncorrelated data. We conducted an extensive set of experiments to compare the proposed method to the recent state of the art methods and demonstrate the robustness of this approach using three different datasets of scanned slides, prepared in different labs using different scanners. Public Library of Science 2017-01-11 /pmc/articles/PMC5226799/ /pubmed/28076381 http://dx.doi.org/10.1371/journal.pone.0169875 Text en © 2017 Alsubaie et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Alsubaie, Najah Trahearn, Nicholas Raza, Shan E. Ahmed Snead, David Rajpoot, Nasir M. Stain Deconvolution Using Statistical Analysis of Multi-Resolution Stain Colour Representation |
title | Stain Deconvolution Using Statistical Analysis of Multi-Resolution Stain Colour Representation |
title_full | Stain Deconvolution Using Statistical Analysis of Multi-Resolution Stain Colour Representation |
title_fullStr | Stain Deconvolution Using Statistical Analysis of Multi-Resolution Stain Colour Representation |
title_full_unstemmed | Stain Deconvolution Using Statistical Analysis of Multi-Resolution Stain Colour Representation |
title_short | Stain Deconvolution Using Statistical Analysis of Multi-Resolution Stain Colour Representation |
title_sort | stain deconvolution using statistical analysis of multi-resolution stain colour representation |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5226799/ https://www.ncbi.nlm.nih.gov/pubmed/28076381 http://dx.doi.org/10.1371/journal.pone.0169875 |
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