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Stain Deconvolution Using Statistical Analysis of Multi-Resolution Stain Colour Representation

Stain colour estimation is a prominent factor of the analysis pipeline in most of histology image processing algorithms. Providing a reliable and efficient stain colour deconvolution approach is fundamental for robust algorithm. In this paper, we propose a novel method for stain colour deconvolution...

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Autores principales: Alsubaie, Najah, Trahearn, Nicholas, Raza, Shan E. Ahmed, Snead, David, Rajpoot, Nasir M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5226799/
https://www.ncbi.nlm.nih.gov/pubmed/28076381
http://dx.doi.org/10.1371/journal.pone.0169875
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author Alsubaie, Najah
Trahearn, Nicholas
Raza, Shan E. Ahmed
Snead, David
Rajpoot, Nasir M.
author_facet Alsubaie, Najah
Trahearn, Nicholas
Raza, Shan E. Ahmed
Snead, David
Rajpoot, Nasir M.
author_sort Alsubaie, Najah
collection PubMed
description Stain colour estimation is a prominent factor of the analysis pipeline in most of histology image processing algorithms. Providing a reliable and efficient stain colour deconvolution approach is fundamental for robust algorithm. In this paper, we propose a novel method for stain colour deconvolution of histology images. This approach statistically analyses the multi-resolutional representation of the image to separate the independent observations out of the correlated ones. We then estimate the stain mixing matrix using filtered uncorrelated data. We conducted an extensive set of experiments to compare the proposed method to the recent state of the art methods and demonstrate the robustness of this approach using three different datasets of scanned slides, prepared in different labs using different scanners.
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spelling pubmed-52267992017-01-31 Stain Deconvolution Using Statistical Analysis of Multi-Resolution Stain Colour Representation Alsubaie, Najah Trahearn, Nicholas Raza, Shan E. Ahmed Snead, David Rajpoot, Nasir M. PLoS One Research Article Stain colour estimation is a prominent factor of the analysis pipeline in most of histology image processing algorithms. Providing a reliable and efficient stain colour deconvolution approach is fundamental for robust algorithm. In this paper, we propose a novel method for stain colour deconvolution of histology images. This approach statistically analyses the multi-resolutional representation of the image to separate the independent observations out of the correlated ones. We then estimate the stain mixing matrix using filtered uncorrelated data. We conducted an extensive set of experiments to compare the proposed method to the recent state of the art methods and demonstrate the robustness of this approach using three different datasets of scanned slides, prepared in different labs using different scanners. Public Library of Science 2017-01-11 /pmc/articles/PMC5226799/ /pubmed/28076381 http://dx.doi.org/10.1371/journal.pone.0169875 Text en © 2017 Alsubaie et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Alsubaie, Najah
Trahearn, Nicholas
Raza, Shan E. Ahmed
Snead, David
Rajpoot, Nasir M.
Stain Deconvolution Using Statistical Analysis of Multi-Resolution Stain Colour Representation
title Stain Deconvolution Using Statistical Analysis of Multi-Resolution Stain Colour Representation
title_full Stain Deconvolution Using Statistical Analysis of Multi-Resolution Stain Colour Representation
title_fullStr Stain Deconvolution Using Statistical Analysis of Multi-Resolution Stain Colour Representation
title_full_unstemmed Stain Deconvolution Using Statistical Analysis of Multi-Resolution Stain Colour Representation
title_short Stain Deconvolution Using Statistical Analysis of Multi-Resolution Stain Colour Representation
title_sort stain deconvolution using statistical analysis of multi-resolution stain colour representation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5226799/
https://www.ncbi.nlm.nih.gov/pubmed/28076381
http://dx.doi.org/10.1371/journal.pone.0169875
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