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Genomic Organization of Repetitive DNA in Woodpeckers (Aves, Piciformes): Implications for Karyotype and ZW Sex Chromosome Differentiation

Birds are characterized by a low proportion of repetitive DNA in their genome when compared to other vertebrates. Among birds, species belonging to Piciformes order, such as woodpeckers, show a relatively higher amount of these sequences. The aim of this study was to analyze the distribution of diff...

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Autores principales: de Oliveira, Thays Duarte, Kretschmer, Rafael, Bertocchi, Natasha Avila, Degrandi, Tiago Marafiga, de Oliveira, Edivaldo Herculano Corrêa, Cioffi, Marcelo de Bello, Garnero, Analía del Valle, Gunski, Ricardo José
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5230766/
https://www.ncbi.nlm.nih.gov/pubmed/28081238
http://dx.doi.org/10.1371/journal.pone.0169987
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author de Oliveira, Thays Duarte
Kretschmer, Rafael
Bertocchi, Natasha Avila
Degrandi, Tiago Marafiga
de Oliveira, Edivaldo Herculano Corrêa
Cioffi, Marcelo de Bello
Garnero, Analía del Valle
Gunski, Ricardo José
author_facet de Oliveira, Thays Duarte
Kretschmer, Rafael
Bertocchi, Natasha Avila
Degrandi, Tiago Marafiga
de Oliveira, Edivaldo Herculano Corrêa
Cioffi, Marcelo de Bello
Garnero, Analía del Valle
Gunski, Ricardo José
author_sort de Oliveira, Thays Duarte
collection PubMed
description Birds are characterized by a low proportion of repetitive DNA in their genome when compared to other vertebrates. Among birds, species belonging to Piciformes order, such as woodpeckers, show a relatively higher amount of these sequences. The aim of this study was to analyze the distribution of different classes of repetitive DNA—including microsatellites, telomere sequences and 18S rDNA—in the karyotype of three Picidae species (Aves, Piciformes)—Colaptes melanochloros (2n = 84), Colaptes campestris (2n = 84) and Melanerpes candidus (2n = 64)–by means of fluorescence in situ hybridization. Clusters of 18S rDNA were found in one microchromosome pair in each of the three species, coinciding to a region of (CGG)(10) sequence accumulation. Interstitial telomeric sequences were found in some macrochromosomes pairs, indicating possible regions of fusions, which can be related to variation of diploid number in the family. Only one, from the 11 different microsatellite sequences used, did not produce any signals. Both species of genus Colaptes showed a similar distribution of microsatellite sequences, with some difference when compared to M. candidus. Microsatellites were found preferentially in the centromeric and telomeric regions of micro and macrochromosomes. However, some sequences produced patterns of interstitial bands in the Z chromosome, which corresponds to the largest element of the karyotype in all three species. This was not observed in the W chromosome of Colaptes melanochloros, which is heterochromatic in most of its length, but was not hybridized by any of the sequences used. These results highlight the importance of microsatellite sequences in differentiation of sex chromosomes, and the accumulation of these sequences is probably responsible for the enlargement of the Z chromosome.
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spelling pubmed-52307662017-01-31 Genomic Organization of Repetitive DNA in Woodpeckers (Aves, Piciformes): Implications for Karyotype and ZW Sex Chromosome Differentiation de Oliveira, Thays Duarte Kretschmer, Rafael Bertocchi, Natasha Avila Degrandi, Tiago Marafiga de Oliveira, Edivaldo Herculano Corrêa Cioffi, Marcelo de Bello Garnero, Analía del Valle Gunski, Ricardo José PLoS One Research Article Birds are characterized by a low proportion of repetitive DNA in their genome when compared to other vertebrates. Among birds, species belonging to Piciformes order, such as woodpeckers, show a relatively higher amount of these sequences. The aim of this study was to analyze the distribution of different classes of repetitive DNA—including microsatellites, telomere sequences and 18S rDNA—in the karyotype of three Picidae species (Aves, Piciformes)—Colaptes melanochloros (2n = 84), Colaptes campestris (2n = 84) and Melanerpes candidus (2n = 64)–by means of fluorescence in situ hybridization. Clusters of 18S rDNA were found in one microchromosome pair in each of the three species, coinciding to a region of (CGG)(10) sequence accumulation. Interstitial telomeric sequences were found in some macrochromosomes pairs, indicating possible regions of fusions, which can be related to variation of diploid number in the family. Only one, from the 11 different microsatellite sequences used, did not produce any signals. Both species of genus Colaptes showed a similar distribution of microsatellite sequences, with some difference when compared to M. candidus. Microsatellites were found preferentially in the centromeric and telomeric regions of micro and macrochromosomes. However, some sequences produced patterns of interstitial bands in the Z chromosome, which corresponds to the largest element of the karyotype in all three species. This was not observed in the W chromosome of Colaptes melanochloros, which is heterochromatic in most of its length, but was not hybridized by any of the sequences used. These results highlight the importance of microsatellite sequences in differentiation of sex chromosomes, and the accumulation of these sequences is probably responsible for the enlargement of the Z chromosome. Public Library of Science 2017-01-12 /pmc/articles/PMC5230766/ /pubmed/28081238 http://dx.doi.org/10.1371/journal.pone.0169987 Text en © 2017 de Oliveira et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
de Oliveira, Thays Duarte
Kretschmer, Rafael
Bertocchi, Natasha Avila
Degrandi, Tiago Marafiga
de Oliveira, Edivaldo Herculano Corrêa
Cioffi, Marcelo de Bello
Garnero, Analía del Valle
Gunski, Ricardo José
Genomic Organization of Repetitive DNA in Woodpeckers (Aves, Piciformes): Implications for Karyotype and ZW Sex Chromosome Differentiation
title Genomic Organization of Repetitive DNA in Woodpeckers (Aves, Piciformes): Implications for Karyotype and ZW Sex Chromosome Differentiation
title_full Genomic Organization of Repetitive DNA in Woodpeckers (Aves, Piciformes): Implications for Karyotype and ZW Sex Chromosome Differentiation
title_fullStr Genomic Organization of Repetitive DNA in Woodpeckers (Aves, Piciformes): Implications for Karyotype and ZW Sex Chromosome Differentiation
title_full_unstemmed Genomic Organization of Repetitive DNA in Woodpeckers (Aves, Piciformes): Implications for Karyotype and ZW Sex Chromosome Differentiation
title_short Genomic Organization of Repetitive DNA in Woodpeckers (Aves, Piciformes): Implications for Karyotype and ZW Sex Chromosome Differentiation
title_sort genomic organization of repetitive dna in woodpeckers (aves, piciformes): implications for karyotype and zw sex chromosome differentiation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5230766/
https://www.ncbi.nlm.nih.gov/pubmed/28081238
http://dx.doi.org/10.1371/journal.pone.0169987
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