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Development of microsatellite markers for Viscum coloratum (Santalaceae) and their application to wild populations(1)
PREMISE OF THE STUDY: Microsatellite primers were developed for Viscum coloratum (Santalaceae), a semiparasitic medicinal plant that is known for its anticancer properties. Due to excessive human harvesting and loss of suitable habitat of its populations, it has become a potentially threatened speci...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5231913/ https://www.ncbi.nlm.nih.gov/pubmed/28090408 http://dx.doi.org/10.3732/apps.1600102 |
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author | Kim, Bo-Yun Park, Han-Sol Kim, Soonok Kim, Young-Dong |
author_facet | Kim, Bo-Yun Park, Han-Sol Kim, Soonok Kim, Young-Dong |
author_sort | Kim, Bo-Yun |
collection | PubMed |
description | PREMISE OF THE STUDY: Microsatellite primers were developed for Viscum coloratum (Santalaceae), a semiparasitic medicinal plant that is known for its anticancer properties. Due to excessive human harvesting and loss of suitable habitat of its populations, it has become a potentially threatened species requiring immediate conservation efforts. METHODS AND RESULTS: Based on transcriptome data for V. coloratum, 124 primer pairs were randomly selected for initial validation, of which 19 yielded polymorphic microsatellite loci, with two to six alleles per locus. The usefulness of these markers was assessed for 60 individuals representing three populations of V. coloratum. Observed and expected heterozygosity values ranged from 0.033 to 0.833 and 0.032 to 0.672, respectively. Cross-species amplification for 19 loci in the related species V. album was conducted. CONCLUSIONS: The 19 newly developed loci are expected to be useful for studying the population genetics and ecological conservation of V. coloratum. |
format | Online Article Text |
id | pubmed-5231913 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-52319132017-01-15 Development of microsatellite markers for Viscum coloratum (Santalaceae) and their application to wild populations(1) Kim, Bo-Yun Park, Han-Sol Kim, Soonok Kim, Young-Dong Appl Plant Sci Primer Note PREMISE OF THE STUDY: Microsatellite primers were developed for Viscum coloratum (Santalaceae), a semiparasitic medicinal plant that is known for its anticancer properties. Due to excessive human harvesting and loss of suitable habitat of its populations, it has become a potentially threatened species requiring immediate conservation efforts. METHODS AND RESULTS: Based on transcriptome data for V. coloratum, 124 primer pairs were randomly selected for initial validation, of which 19 yielded polymorphic microsatellite loci, with two to six alleles per locus. The usefulness of these markers was assessed for 60 individuals representing three populations of V. coloratum. Observed and expected heterozygosity values ranged from 0.033 to 0.833 and 0.032 to 0.672, respectively. Cross-species amplification for 19 loci in the related species V. album was conducted. CONCLUSIONS: The 19 newly developed loci are expected to be useful for studying the population genetics and ecological conservation of V. coloratum. Botanical Society of America 2017-01-05 /pmc/articles/PMC5231913/ /pubmed/28090408 http://dx.doi.org/10.3732/apps.1600102 Text en © 2017 Kim et al. Published by the Botanical Society of America https://creativecommons.org/licenses/by-nc-sa/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC-BY-NC-SA 4.0 (https://creativecommons.org/licenses/by-nc-sa/4.0/) ), which permits unrestricted noncommercial use and redistribution provided that the original author and source are credited and the new work is distributed under the same license as the original. |
spellingShingle | Primer Note Kim, Bo-Yun Park, Han-Sol Kim, Soonok Kim, Young-Dong Development of microsatellite markers for Viscum coloratum (Santalaceae) and their application to wild populations(1) |
title | Development of microsatellite markers for Viscum coloratum (Santalaceae) and their application to wild populations(1) |
title_full | Development of microsatellite markers for Viscum coloratum (Santalaceae) and their application to wild populations(1) |
title_fullStr | Development of microsatellite markers for Viscum coloratum (Santalaceae) and their application to wild populations(1) |
title_full_unstemmed | Development of microsatellite markers for Viscum coloratum (Santalaceae) and their application to wild populations(1) |
title_short | Development of microsatellite markers for Viscum coloratum (Santalaceae) and their application to wild populations(1) |
title_sort | development of microsatellite markers for viscum coloratum (santalaceae) and their application to wild populations(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5231913/ https://www.ncbi.nlm.nih.gov/pubmed/28090408 http://dx.doi.org/10.3732/apps.1600102 |
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