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Development of microsatellite markers for Viscum coloratum (Santalaceae) and their application to wild populations(1)

PREMISE OF THE STUDY: Microsatellite primers were developed for Viscum coloratum (Santalaceae), a semiparasitic medicinal plant that is known for its anticancer properties. Due to excessive human harvesting and loss of suitable habitat of its populations, it has become a potentially threatened speci...

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Autores principales: Kim, Bo-Yun, Park, Han-Sol, Kim, Soonok, Kim, Young-Dong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5231913/
https://www.ncbi.nlm.nih.gov/pubmed/28090408
http://dx.doi.org/10.3732/apps.1600102
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author Kim, Bo-Yun
Park, Han-Sol
Kim, Soonok
Kim, Young-Dong
author_facet Kim, Bo-Yun
Park, Han-Sol
Kim, Soonok
Kim, Young-Dong
author_sort Kim, Bo-Yun
collection PubMed
description PREMISE OF THE STUDY: Microsatellite primers were developed for Viscum coloratum (Santalaceae), a semiparasitic medicinal plant that is known for its anticancer properties. Due to excessive human harvesting and loss of suitable habitat of its populations, it has become a potentially threatened species requiring immediate conservation efforts. METHODS AND RESULTS: Based on transcriptome data for V. coloratum, 124 primer pairs were randomly selected for initial validation, of which 19 yielded polymorphic microsatellite loci, with two to six alleles per locus. The usefulness of these markers was assessed for 60 individuals representing three populations of V. coloratum. Observed and expected heterozygosity values ranged from 0.033 to 0.833 and 0.032 to 0.672, respectively. Cross-species amplification for 19 loci in the related species V. album was conducted. CONCLUSIONS: The 19 newly developed loci are expected to be useful for studying the population genetics and ecological conservation of V. coloratum.
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spelling pubmed-52319132017-01-15 Development of microsatellite markers for Viscum coloratum (Santalaceae) and their application to wild populations(1) Kim, Bo-Yun Park, Han-Sol Kim, Soonok Kim, Young-Dong Appl Plant Sci Primer Note PREMISE OF THE STUDY: Microsatellite primers were developed for Viscum coloratum (Santalaceae), a semiparasitic medicinal plant that is known for its anticancer properties. Due to excessive human harvesting and loss of suitable habitat of its populations, it has become a potentially threatened species requiring immediate conservation efforts. METHODS AND RESULTS: Based on transcriptome data for V. coloratum, 124 primer pairs were randomly selected for initial validation, of which 19 yielded polymorphic microsatellite loci, with two to six alleles per locus. The usefulness of these markers was assessed for 60 individuals representing three populations of V. coloratum. Observed and expected heterozygosity values ranged from 0.033 to 0.833 and 0.032 to 0.672, respectively. Cross-species amplification for 19 loci in the related species V. album was conducted. CONCLUSIONS: The 19 newly developed loci are expected to be useful for studying the population genetics and ecological conservation of V. coloratum. Botanical Society of America 2017-01-05 /pmc/articles/PMC5231913/ /pubmed/28090408 http://dx.doi.org/10.3732/apps.1600102 Text en © 2017 Kim et al. Published by the Botanical Society of America https://creativecommons.org/licenses/by-nc-sa/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC-BY-NC-SA 4.0 (https://creativecommons.org/licenses/by-nc-sa/4.0/) ), which permits unrestricted noncommercial use and redistribution provided that the original author and source are credited and the new work is distributed under the same license as the original.
spellingShingle Primer Note
Kim, Bo-Yun
Park, Han-Sol
Kim, Soonok
Kim, Young-Dong
Development of microsatellite markers for Viscum coloratum (Santalaceae) and their application to wild populations(1)
title Development of microsatellite markers for Viscum coloratum (Santalaceae) and their application to wild populations(1)
title_full Development of microsatellite markers for Viscum coloratum (Santalaceae) and their application to wild populations(1)
title_fullStr Development of microsatellite markers for Viscum coloratum (Santalaceae) and their application to wild populations(1)
title_full_unstemmed Development of microsatellite markers for Viscum coloratum (Santalaceae) and their application to wild populations(1)
title_short Development of microsatellite markers for Viscum coloratum (Santalaceae) and their application to wild populations(1)
title_sort development of microsatellite markers for viscum coloratum (santalaceae) and their application to wild populations(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5231913/
https://www.ncbi.nlm.nih.gov/pubmed/28090408
http://dx.doi.org/10.3732/apps.1600102
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