Cargando…
Generalising Ward’s Method for Use with Manhattan Distances
The claim that Ward’s linkage algorithm in hierarchical clustering is limited to use with Euclidean distances is investigated. In this paper, Ward’s clustering algorithm is generalised to use with l(1) norm or Manhattan distances. We argue that the generalisation of Ward’s linkage method to incorpor...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5235383/ https://www.ncbi.nlm.nih.gov/pubmed/28085891 http://dx.doi.org/10.1371/journal.pone.0168288 |
_version_ | 1782495146620747776 |
---|---|
author | Strauss, Trudie von Maltitz, Michael Johan |
author_facet | Strauss, Trudie von Maltitz, Michael Johan |
author_sort | Strauss, Trudie |
collection | PubMed |
description | The claim that Ward’s linkage algorithm in hierarchical clustering is limited to use with Euclidean distances is investigated. In this paper, Ward’s clustering algorithm is generalised to use with l(1) norm or Manhattan distances. We argue that the generalisation of Ward’s linkage method to incorporate Manhattan distances is theoretically sound and provide an example of where this method outperforms the method using Euclidean distances. As an application, we perform statistical analyses on languages using methods normally applied to biology and genetic classification. We aim to quantify differences in character traits between languages and use a statistical language signature based on relative bi-gram (sequence of two letters) frequencies to calculate a distance matrix between 32 Indo-European languages. We then use Ward’s method of hierarchical clustering to classify the languages, using the Euclidean distance and the Manhattan distance. Results obtained from using the different distance metrics are compared to show that the Ward’s algorithm characteristic of minimising intra-cluster variation and maximising inter-cluster variation is not violated when using the Manhattan metric. |
format | Online Article Text |
id | pubmed-5235383 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-52353832017-02-06 Generalising Ward’s Method for Use with Manhattan Distances Strauss, Trudie von Maltitz, Michael Johan PLoS One Research Article The claim that Ward’s linkage algorithm in hierarchical clustering is limited to use with Euclidean distances is investigated. In this paper, Ward’s clustering algorithm is generalised to use with l(1) norm or Manhattan distances. We argue that the generalisation of Ward’s linkage method to incorporate Manhattan distances is theoretically sound and provide an example of where this method outperforms the method using Euclidean distances. As an application, we perform statistical analyses on languages using methods normally applied to biology and genetic classification. We aim to quantify differences in character traits between languages and use a statistical language signature based on relative bi-gram (sequence of two letters) frequencies to calculate a distance matrix between 32 Indo-European languages. We then use Ward’s method of hierarchical clustering to classify the languages, using the Euclidean distance and the Manhattan distance. Results obtained from using the different distance metrics are compared to show that the Ward’s algorithm characteristic of minimising intra-cluster variation and maximising inter-cluster variation is not violated when using the Manhattan metric. Public Library of Science 2017-01-13 /pmc/articles/PMC5235383/ /pubmed/28085891 http://dx.doi.org/10.1371/journal.pone.0168288 Text en © 2017 Strauss, von Maltitz http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Strauss, Trudie von Maltitz, Michael Johan Generalising Ward’s Method for Use with Manhattan Distances |
title | Generalising Ward’s Method for Use with Manhattan Distances |
title_full | Generalising Ward’s Method for Use with Manhattan Distances |
title_fullStr | Generalising Ward’s Method for Use with Manhattan Distances |
title_full_unstemmed | Generalising Ward’s Method for Use with Manhattan Distances |
title_short | Generalising Ward’s Method for Use with Manhattan Distances |
title_sort | generalising ward’s method for use with manhattan distances |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5235383/ https://www.ncbi.nlm.nih.gov/pubmed/28085891 http://dx.doi.org/10.1371/journal.pone.0168288 |
work_keys_str_mv | AT strausstrudie generalisingwardsmethodforusewithmanhattandistances AT vonmaltitzmichaeljohan generalisingwardsmethodforusewithmanhattandistances |