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author Gilbert, Gregory S.
Ballesteros, Javier O.
Barrios-Rodriguez, Cesar A.
Bonadies, Ernesto F.
Cedeño-Sánchez, Marjorie L.
Fossatti-Caballero, Nohely J.
Trejos-Rodríguez, Mariam M.
Pérez-Suñiga, José Moises
Holub-Young, Katharine S.
Henn, Laura A. W.
Thompson, Jennifer B.
García-López, Cesar G.
Romo, Amanda C.
Johnston, Daniel C.
Barrick, Pablo P.
Jordan, Fulvia A.
Hershcovich, Shiran
Russo, Natalie
Sánchez, Juan David
Fábrega, Juan Pablo
Lumpkin, Raleigh
McWilliams, Hunter A.
Chester, Kathleen N.
Burgos, Alana C.
Wong, E. Beatriz
Diab, Jonathan H.
Renteria, Sonia A.
Harrower, Jennifer T.
Hooton, Douglas A.
Glenn, Travis C.
Faircloth, Brant C.
Hubbell, Stephen P.
author_facet Gilbert, Gregory S.
Ballesteros, Javier O.
Barrios-Rodriguez, Cesar A.
Bonadies, Ernesto F.
Cedeño-Sánchez, Marjorie L.
Fossatti-Caballero, Nohely J.
Trejos-Rodríguez, Mariam M.
Pérez-Suñiga, José Moises
Holub-Young, Katharine S.
Henn, Laura A. W.
Thompson, Jennifer B.
García-López, Cesar G.
Romo, Amanda C.
Johnston, Daniel C.
Barrick, Pablo P.
Jordan, Fulvia A.
Hershcovich, Shiran
Russo, Natalie
Sánchez, Juan David
Fábrega, Juan Pablo
Lumpkin, Raleigh
McWilliams, Hunter A.
Chester, Kathleen N.
Burgos, Alana C.
Wong, E. Beatriz
Diab, Jonathan H.
Renteria, Sonia A.
Harrower, Jennifer T.
Hooton, Douglas A.
Glenn, Travis C.
Faircloth, Brant C.
Hubbell, Stephen P.
author_sort Gilbert, Gregory S.
collection PubMed
description PREMISE OF THE STUDY: Field methodology and image analysis protocols using acoustic tomography were developed and evaluated as a tool to estimate the amount of internal decay and damage of living trees, with special attention to tropical rainforest trees with irregular trunk shapes. METHODS AND RESULTS: Living trunks of a diversity of tree species in tropical rainforests in the Republic of Panama were scanned using an Argus Electronic PiCUS 3 Sonic Tomograph and evaluated for the amount and patterns of internal decay. A protocol using ImageJ analysis software was used to quantify the proportions of intact and compromised wood. The protocols provide replicable estimates of internal decay and cavities for trees of varying shapes, wood density, and bark thickness. CONCLUSIONS: Sonic tomography, coupled with image analysis, provides an efficient, noninvasive approach to evaluate decay patterns and structural integrity of even irregularly shaped living trees.
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spelling pubmed-52386982017-01-18 Use of sonic tomography to detect and quantify wood decay in living trees(1) Gilbert, Gregory S. Ballesteros, Javier O. Barrios-Rodriguez, Cesar A. Bonadies, Ernesto F. Cedeño-Sánchez, Marjorie L. Fossatti-Caballero, Nohely J. Trejos-Rodríguez, Mariam M. Pérez-Suñiga, José Moises Holub-Young, Katharine S. Henn, Laura A. W. Thompson, Jennifer B. García-López, Cesar G. Romo, Amanda C. Johnston, Daniel C. Barrick, Pablo P. Jordan, Fulvia A. Hershcovich, Shiran Russo, Natalie Sánchez, Juan David Fábrega, Juan Pablo Lumpkin, Raleigh McWilliams, Hunter A. Chester, Kathleen N. Burgos, Alana C. Wong, E. Beatriz Diab, Jonathan H. Renteria, Sonia A. Harrower, Jennifer T. Hooton, Douglas A. Glenn, Travis C. Faircloth, Brant C. Hubbell, Stephen P. Appl Plant Sci Protocol Note PREMISE OF THE STUDY: Field methodology and image analysis protocols using acoustic tomography were developed and evaluated as a tool to estimate the amount of internal decay and damage of living trees, with special attention to tropical rainforest trees with irregular trunk shapes. METHODS AND RESULTS: Living trunks of a diversity of tree species in tropical rainforests in the Republic of Panama were scanned using an Argus Electronic PiCUS 3 Sonic Tomograph and evaluated for the amount and patterns of internal decay. A protocol using ImageJ analysis software was used to quantify the proportions of intact and compromised wood. The protocols provide replicable estimates of internal decay and cavities for trees of varying shapes, wood density, and bark thickness. CONCLUSIONS: Sonic tomography, coupled with image analysis, provides an efficient, noninvasive approach to evaluate decay patterns and structural integrity of even irregularly shaped living trees. Botanical Society of America 2016-12-16 /pmc/articles/PMC5238698/ /pubmed/28101433 http://dx.doi.org/10.3732/apps.1600060 Text en © 2016 Gilbert et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Protocol Note
Gilbert, Gregory S.
Ballesteros, Javier O.
Barrios-Rodriguez, Cesar A.
Bonadies, Ernesto F.
Cedeño-Sánchez, Marjorie L.
Fossatti-Caballero, Nohely J.
Trejos-Rodríguez, Mariam M.
Pérez-Suñiga, José Moises
Holub-Young, Katharine S.
Henn, Laura A. W.
Thompson, Jennifer B.
García-López, Cesar G.
Romo, Amanda C.
Johnston, Daniel C.
Barrick, Pablo P.
Jordan, Fulvia A.
Hershcovich, Shiran
Russo, Natalie
Sánchez, Juan David
Fábrega, Juan Pablo
Lumpkin, Raleigh
McWilliams, Hunter A.
Chester, Kathleen N.
Burgos, Alana C.
Wong, E. Beatriz
Diab, Jonathan H.
Renteria, Sonia A.
Harrower, Jennifer T.
Hooton, Douglas A.
Glenn, Travis C.
Faircloth, Brant C.
Hubbell, Stephen P.
Use of sonic tomography to detect and quantify wood decay in living trees(1)
title Use of sonic tomography to detect and quantify wood decay in living trees(1)
title_full Use of sonic tomography to detect and quantify wood decay in living trees(1)
title_fullStr Use of sonic tomography to detect and quantify wood decay in living trees(1)
title_full_unstemmed Use of sonic tomography to detect and quantify wood decay in living trees(1)
title_short Use of sonic tomography to detect and quantify wood decay in living trees(1)
title_sort use of sonic tomography to detect and quantify wood decay in living trees(1)
topic Protocol Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5238698/
https://www.ncbi.nlm.nih.gov/pubmed/28101433
http://dx.doi.org/10.3732/apps.1600060
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